Metagenome-assembled genome: SRR8114077_bin.22_CON... - BioSample

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Metagenome-assembled genome: SRR8114077_bin.22_CONCOCT_v1.1_MAG

Identifiers: BioSample: SAMEA14086116; SRA: ERS11689247

Organism: uncultured Lachnoanaerobaculum sp.
cellular organisms; Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Lachnoanaerobaculum; environmental samples

Attributes

collection date	2013-03-25
broad-scale environmental context	Host-associated
local-scale environmental context	Human
environmental medium	Digestive system
geographic location	Luxembourg
investigation type	metagenome-assembled genome
isolation source	human gut metagenome
project name	Recent evidence from high-resolution molecular studies suggests links between microbial dysbiosis in the gastrointestinal tract and a number of complex chronic diseases including diabetes mellitus. The present study forms a pilot study for the larger Luxembourg-based Diabetes Multiplex Family Study (MUST). Within the pilot study, we investigate the interplay of the gastrointestinal microbiota, lifestyle and genetic background in an observational study of families with two or more individuals affected by type 1 diabetes mellitus. Faecal samples which have undergone comprehensive biomolecular extractions are currently analysed using a multi-omics approach. Anthropometric data, including demographics, medical history, health status, medication, and dietary habits of all study participants were collected and are integrated with molecular data.
sample name	SRR8114077_bin.22_CONCOCT_v1.1_MAG
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2023-01-03
ENA-LAST-UPDATE	2023-01-03
External Id	SAMEA14086116
INSDC center alias	EBI
INSDC center name	European Bioinformatics Institute
INSDC first public	2023-01-03T00:33:14Z
INSDC last update	2023-01-03T00:33:14Z
INSDC status	public
Submitter Id	SRR8114077_bin.22_CONCOCT_v1.1_MAG
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	metaSPAdes v3.14.1
binning parameters	Default
binning software	CONCOCT v1.1
broker name	EMG broker account, EMBL-EBI
completeness score	97.47
completeness software	CheckM
contamination score	1.61
geographic location (latitude)	49.5
geographic location (longitude)	6.2
metagenomic source	human gut metagenome
sample derived from	SAMN09837407
scientific_name	uncultured Lachnoanaerobaculum sp.
sequencing method	Illumina HiSeq 4000
taxonomic identity marker	multi-marker approach

Description: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR8114077 of study SRP072561.