Metagenome-assembled genome: SRR7721865_bin.73_CON... - BioSample

Warning: The NCBI web site requires JavaScript to function. more...

Result Filters

Organism: uncultured Porphyromonas sp.
cellular organisms; Bacteria; FCB group; Bacteroidota/Chlorobiota group; Bacteroidota; Bacteroidia; Bacteroidales; Porphyromonadaceae; Porphyromonas; environmental samples

Attributes

collection date	2017-03-01
broad-scale environmental context	Host-associated
local-scale environmental context	Human
environmental medium	Digestive system
geographic location	China
investigation type	metagenome-assembled genome
isolation source	human gut metagenome
project name	Metagenomic data of gut microbiota in T2D diabetes patients before and after three-day metformin treatment
sample name	SRR7721865_bin.73_CONCOCT_v1.1_MAG
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2023-01-03
ENA-LAST-UPDATE	2023-01-03
External Id	SAMEA14086054
INSDC center alias	EBI
INSDC center name	European Bioinformatics Institute
INSDC first public	2023-01-03T00:33:27Z
INSDC last update	2023-01-03T00:33:27Z
INSDC status	public
Submitter Id	SRR7721865_bin.73_CONCOCT_v1.1_MAG
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	metaspades_v3.13.0
binning parameters	Default
binning software	CONCOCT v1.1
broker name	EMG broker account, EMBL-EBI
completeness score	99.29
completeness software	CheckM
contamination score	2.04
geographic location (latitude)	39.916668
geographic location (longitude)	116.38333
metagenomic source	human gut metagenome
sample derived from	SAMN09864054
scientific_name	uncultured Porphyromonas sp.
sequencing method	Illumina HiSeq 4000
taxonomic identity marker	multi-marker approach

Description: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR7721865 of study SRP158402.

BioProject: PRJEB51075 Large-scale analysis of novel cellular microbes from the human gut biome
Retrieve all samples from this project

Metagenome-assembled genome: SRR7721865_bin.73_CONCOCT_v1.1_MAG
Metagenome-assembled genome: SRR7721865_bin.73_CONCOCT_v1.1_MAG

biosample
MAG TPA_asm: uncultured Clostridia bacterium isolate ERR414233_bin.94_CONCOCT_v1...
MAG TPA_asm: uncultured Clostridia bacterium isolate ERR414233_bin.94_CONCOCT_v1.1_MAG, whole genome shotgun sequencing project
gi|2423512636|tpe|CALHNU000000000.1 NU010000000

Nucleotide
MAG TPA_asm: uncultured Lachnospiraceae bacterium isolate ERR321617_bin.90_CONCO...
MAG TPA_asm: uncultured Lachnospiraceae bacterium isolate ERR321617_bin.90_CONCOCT_v1.1_MAG, whole genome shotgun sequencing project
gi|2424948797|tpe|CALHKA000000000.1 KA010000000

Nucleotide
MAG TPA_asm: uncultured Prevotella sp. isolate ERR1600754_bin.91_CONCOCT_v1.1_MA...
MAG TPA_asm: uncultured Prevotella sp. isolate ERR1600754_bin.91_CONCOCT_v1.1_MAG, whole genome shotgun sequencing project
gi|2424846801|tpe|CALIDQ000000000.1 DQ010000000

Nucleotide
MAG TPA_asm: uncultured Atopobium sp. isolate ERR589685_bin.11_CONCOCT_v1.1_MAG,...
MAG TPA_asm: uncultured Atopobium sp. isolate ERR589685_bin.11_CONCOCT_v1.1_MAG, whole genome shotgun sequencing project
gi|2423183157|tpe|CALIJP000000000.1 JP010000000

Nucleotide

Your browsing activity is empty.

Activity recording is turned off.

You are here: NCBI > DNA & RNA > BioSample