Metagenome-assembled genome: SRR7658676_bin.36_CON... - BioSample

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Result Filters

Organism: uncultured Collinsella sp.
cellular organisms; Bacteria; Bacillati; Actinomycetota; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella; environmental samples

Attributes

collection date	not provided
broad-scale environmental context	Host-associated
local-scale environmental context	Human
environmental medium	Digestive system
geographic location	Madagascar
investigation type	metagenome-assembled genome
isolation source	human gut metagenome
project name	Stool samples from 112 individuals (two villages) in two rural communities of north-eastern Madagascar. Samples were collected by the Madagascar Health and Environmental Research (MAHERY) initiative between 2013 and 2014, and sequenced with Illumina HiSeq 2500.
sample name	SRR7658676_bin.36_CONCOCT_v1.1_MAG
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2023-01-03
ENA-LAST-UPDATE	2023-01-03
External Id	SAMEA14086044
INSDC center alias	EBI
INSDC center name	European Bioinformatics Institute
INSDC first public	2023-01-03T00:33:21Z
INSDC last update	2023-01-03T00:33:21Z
INSDC status	public
Submitter Id	SRR7658676_bin.36_CONCOCT_v1.1_MAG
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	metaspadesv3.12.0
binning parameters	Default
binning software	CONCOCT v1.1
broker name	EMG broker account, EMBL-EBI
completeness score	100
completeness software	CheckM
contamination score	0.81
geographic location (latitude)	not provided
geographic location (longitude)	not provided
metagenomic source	human gut metagenome
sample derived from	SAMN09781745
scientific_name	uncultured Collinsella sp.
sequencing method	Illumina HiSeq 2500
taxonomic identity marker	multi-marker approach

Description: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR7658676 of study SRP156699.

BioProject: PRJEB51075 Large-scale analysis of novel cellular microbes from the human gut biome
Retrieve all samples from this project

Metagenome-assembled genome: SRR7658676_bin.36_CONCOCT_v1.1_MAG
Metagenome-assembled genome: SRR7658676_bin.36_CONCOCT_v1.1_MAG

biosample
Metagenome-assembled genome: ERR321651_bin.50_CONCOCT_v1.1_MAG
Metagenome-assembled genome: ERR321651_bin.50_CONCOCT_v1.1_MAG

biosample
MAG TPA_asm: uncultured Candidatus Saccharibacteria bacterium isolate ERR589639_...
MAG TPA_asm: uncultured Candidatus Saccharibacteria bacterium isolate ERR589639_bin.19_CONCOCT_v1.1_MAG, whole genome shotgun sequencing project
gi|2423011378|tpe|CALHWE000000000.1 WE010000000

Nucleotide
MAG TPA_asm: uncultured Neglectibacter sp. isolate SRR5024280_bin.39_CONCOCT_v1....
MAG TPA_asm: uncultured Neglectibacter sp. isolate SRR5024280_bin.39_CONCOCT_v1.1_MAG, whole genome shotgun sequencing project
gi|2424311004|tpe|CALFFN000000000.1 FN010000000

Nucleotide
MAG TPA_asm: uncultured Collinsella sp. isolate ERR414364_bin.69_CONCOCT_v1.1_MA...
MAG TPA_asm: uncultured Collinsella sp. isolate ERR414364_bin.69_CONCOCT_v1.1_MAG, whole genome shotgun sequencing project
gi|2423879930|tpe|CALCIR000000000.1 IR010000000

Nucleotide

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