Metagenome-assembled genome: SRR5580110_bin.54_CON... - BioSample

Warning: The NCBI web site requires JavaScript to function. more...

Result Filters

Organism: uncultured Clostridia bacterium
cellular organisms; Bacteria; Bacillati; Bacillota; Clostridia; environmental samples

Attributes

collection date	2014-11-04
broad-scale environmental context	Host-associated
local-scale environmental context	Human
environmental medium	Digestive system
geographic location	Spain
investigation type	metagenome-assembled genome
isolation source	human gut metagenome
project name	In this study, we performed a randomized, placebo-controlled, double-blind study in newly diagnosed T2D patients on a calorie-restricted diet and showed that metformin, but not calorie restriction, had rapid effects on the composition and function of the gut microbiota.
sample name	SRR5580110_bin.54_CONCOCT_v1.1_MAG
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2023-01-03
ENA-LAST-UPDATE	2023-01-03
External Id	SAMEA14085893
INSDC center alias	EBI
INSDC center name	European Bioinformatics Institute
INSDC first public	2023-01-03T00:33:43Z
INSDC last update	2023-01-03T00:33:43Z
INSDC status	public
Submitter Id	SRR5580110_bin.54_CONCOCT_v1.1_MAG
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	metaspades_v3.13.0
binning parameters	Default
binning software	CONCOCT v1.1
broker name	EMG broker account, EMBL-EBI
completeness score	69.6
completeness software	CheckM
contamination score	1.7
geographic location (latitude)	41.99774
geographic location (longitude)	2.820006
metagenomic source	human gut metagenome
sample derived from	SAMN06233224
scientific_name	uncultured Clostridia bacterium
sequencing method	NextSeq 500
taxonomic identity marker	multi-marker approach

Description: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR5580110 of study SRP100518.