Metagenome-assembled genome: SRR5279288_bin.84_CON... - BioSample

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Metagenome-assembled genome: SRR5279288_bin.84_CONCOCT_v1.1_MAG

Identifiers: BioSample: SAMEA14085825; SRA: ERS11688956

Organism: Campylobacter fetus
cellular organisms; Bacteria; Campylobacterota; Epsilonproteobacteria; Campylobacterales; Campylobacteraceae; Campylobacter

Attributes

collection date	2015-10-01
broad-scale environmental context	Host-associated
local-scale environmental context	Human
environmental medium	Digestive system
geographic location	China
investigation type	metagenome-assembled genome
isolation source	human gut metagenome
project name	To reveal the relationship between the gut microbiome and ankylosing spondylitis, a quantitative metagenomics study that was based on deep shotgun sequencing of the gut microbial DNA from 211 Chinese individuals (97 patients and 104 healthy controls) was carried out. A total of 23,709 genes and 16 metagenomic species that were differentially abundant in the two groups were identified.
sample name	SRR5279288_bin.84_CONCOCT_v1.1_MAG
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2023-01-03
ENA-LAST-UPDATE	2023-01-03
External Id	SAMEA14085825
INSDC center alias	EBI
INSDC center name	European Bioinformatics Institute
INSDC first public	2023-01-03T00:33:16Z
INSDC last update	2023-01-03T00:33:16Z
INSDC status	public
Submitter Id	SRR5279288_bin.84_CONCOCT_v1.1_MAG
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	metaspadesv3.10.0
binning parameters	Default
binning software	CONCOCT v1.1
broker name	EMG broker account, EMBL-EBI
completeness score	95.48
completeness software	CheckM
contamination score	2.64
geographic location (latitude)	30.3
geographic location (longitude)	120.2
metagenomic source	human gut metagenome
sample derived from	SAMN06348129
scientific_name	Campylobacter fetus
sequencing method	Illumina HiSeq 2000
taxonomic identity marker	multi-marker approach

Description: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR5279288 of study SRP100575.