Metagenome-assembled genome: SRR5024276_bin.21_CON... - BioSample

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Result Filters

Organism: uncultured Clostridia bacterium
cellular organisms; Bacteria; Bacillati; Bacillota; Clostridia; environmental samples

Attributes

collection date	2015-02-13
broad-scale environmental context	Host-associated
local-scale environmental context	Human
environmental medium	Digestive system
geographic location	USA
investigation type	metagenome-assembled genome
isolation source	human gut metagenome
project name	De novo reconstruction of bacterial genomes allows high-resolution tracking of microbial colonization in Fecal Microbiota Transplantation experiments
sample name	SRR5024276_bin.21_CONCOCT_v1.1_MAG
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2023-01-03
ENA-LAST-UPDATE	2023-01-03
External Id	SAMEA14085771
INSDC center alias	EBI
INSDC center name	European Bioinformatics Institute
INSDC first public	2023-01-03T00:33:34Z
INSDC last update	2023-01-03T00:33:34Z
INSDC status	public
Submitter Id	SRR5024276_bin.21_CONCOCT_v1.1_MAG
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	metaspadesv3.11.1
binning parameters	Default
binning software	CONCOCT v1.1
broker name	EMG broker account, EMBL-EBI
completeness score	91.81
completeness software	CheckM
contamination score	0.79
geographic location (latitude)	41.88
geographic location (longitude)	-87.63
metagenomic source	human gut metagenome
sample derived from	SAMN06018973
scientific_name	uncultured Clostridia bacterium
sequencing method	NextSeq 550
taxonomic identity marker	multi-marker approach

Description: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR5024276 of study SRP093449.