Metagenome-assembled genome: SRR3993004_bin.83_CON... - BioSample

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Result Filters

Organism: uncultured Oribacterium sp.
cellular organisms; Bacteria; Terrabacteria group; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Oribacterium; environmental samples

Attributes

collection date	2013-06-01
broad-scale environmental context	Host-associated
local-scale environmental context	Human
environmental medium	Digestive system
geographic location	Mongolia
investigation type	metagenome-assembled genome
isolation source	human gut metagenome
project name	Mongolian Metagenome
sample name	SRR3993004_bin.83_CONCOCT_v1.1_MAG
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2023-01-03
ENA-LAST-UPDATE	2023-01-03
External Id	SAMEA14085737
INSDC center alias	EBI
INSDC center name	European Bioinformatics Institute
INSDC first public	2023-01-03T00:33:13Z
INSDC last update	2023-01-03T00:33:13Z
INSDC status	public
Submitter Id	SRR3993004_bin.83_CONCOCT_v1.1_MAG
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	unknown v0.0
binning parameters	Default
binning software	CONCOCT v1.1
broker name	EMG broker account, EMBL-EBI
completeness score	94.72
completeness software	CheckM
contamination score	0.25
geographic location (latitude)	47.19
geographic location (longitude)	110.39
metagenomic source	human gut metagenome
sample derived from	SAMN05414935
scientific_name	uncultured Oribacterium sp.
sequencing method	Illumina HiSeq 4000
taxonomic identity marker	multi-marker approach

Description: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR3993004 of study SRP080787.

BioProject: PRJEB51075 Large-scale analysis of novel cellular microbes from the human gut biome
Retrieve all samples from this project

Metagenome-assembled genome: SRR3993004_bin.83_CONCOCT_v1.1_MAG
Metagenome-assembled genome: SRR3993004_bin.83_CONCOCT_v1.1_MAG

biosample
MAG TPA_asm: uncultured Collinsella sp. isolate ERR912062_bin.33_CONCOCT_v1.1_MA...
MAG TPA_asm: uncultured Collinsella sp. isolate ERR912062_bin.33_CONCOCT_v1.1_MAG, whole genome shotgun sequencing project
gi|2423818441|tpe|CALEBE000000000.1 BE010000000

Nucleotide
Metagenome-assembled genome: ERR479332_bin.38_CONCOCT_v1.1_MAG
Metagenome-assembled genome: ERR479332_bin.38_CONCOCT_v1.1_MAG

biosample
MAG TPA_asm: uncultured Candidatus Saccharibacteria bacterium isolate ERR589493_...
MAG TPA_asm: uncultured Candidatus Saccharibacteria bacterium isolate ERR589493_bin.65_CONCOCT_v1.1_MAG, whole genome shotgun sequencing project
gi|2423000840|tpe|CALIAC000000000.1 AC010000000

Nucleotide
Metagenome-assembled genome: SRR3108079_bin.5_CONCOCT_v1.1_MAG
Metagenome-assembled genome: SRR3108079_bin.5_CONCOCT_v1.1_MAG

biosample

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