Metagenome-assembled genome: SRR3582179_bin.37_CON... - BioSample

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Metagenome-assembled genome: SRR3582179_bin.37_CONCOCT_v1.1_MAG

Identifiers: BioSample: SAMEA14085714; SRA: ERS11688845

Organism: uncultured Flavobacteriales bacterium
cellular organisms; Bacteria; FCB group; Bacteroidota/Chlorobiota group; Bacteroidota; Flavobacteriia; Flavobacteriales; environmental samples

Attributes

collection date	not provided
broad-scale environmental context	Host-associated
local-scale environmental context	Human
environmental medium	Digestive system
geographic location	USA
investigation type	metagenome-assembled genome
isolation source	human gut metagenome
project name	This is an uncontrolled, prospective open-label study of FMT from healthy donors to subjects with active CD. A single FMT was performed via colonoscopy. Stool samples were collected prior to FMT and at two time points, four and eight weeks after FMT. Recipients’ microbial diversity, mucosal T-cell phenotypes and clinical and inflammatory parameters were measured over 12 weeks, and safety over 26 weeks.
sample name	SRR3582179_bin.37_CONCOCT_v1.1_MAG
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2023-01-03
ENA-LAST-UPDATE	2023-01-03
External Id	SAMEA14085714
INSDC center alias	EBI
INSDC center name	European Bioinformatics Institute
INSDC first public	2023-01-03T00:33:45Z
INSDC last update	2023-01-03T00:33:45Z
INSDC status	public
Submitter Id	SRR3582179_bin.37_CONCOCT_v1.1_MAG
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	metaspadesv3.10.0
binning parameters	Default
binning software	CONCOCT v1.1
broker name	EMG broker account, EMBL-EBI
completeness score	95.92
completeness software	CheckM
contamination score	0.54
geographic location (latitude)	not provided
geographic location (longitude)	not provided
metagenomic source	human gut metagenome
sample derived from	SAMN05065779
scientific_name	uncultured Flavobacteriales bacterium
sequencing method	Illumina HiSeq 2500
taxonomic identity marker	multi-marker approach

Description: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR3582179 of study SRP075633.