Metagenome-assembled genome: SRR3160452_bin.77_CON... - BioSample

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Metagenome-assembled genome: SRR3160452_bin.77_CONCOCT_v1.1_MAG

Identifiers: BioSample: SAMEA14085678; SRA: ERS11688809

Organism: uncultured Collinsella sp.
cellular organisms; Bacteria; Bacillati; Actinomycetota; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella; environmental samples

Attributes

collection date	2014-05-15
broad-scale environmental context	Host-associated
local-scale environmental context	Human
environmental medium	Digestive system
geographic location	USA
investigation type	metagenome-assembled genome
isolation source	human gut metagenome
project name	This is a prospective cohort study using metagenomics to characterize gut microbiota populations of pediatric short bowel syndrome (SBS) patients with variable growth trajectories. Stool samples were collected from children with SBS and healthy controls over a three month period. Differences in gut bacterial populations were compared between healthy children and those with SBS (including a more in depth analysis of SBS children exhibiting poor and good growth).
sample name	SRR3160452_bin.77_CONCOCT_v1.1_MAG
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2023-01-03
ENA-LAST-UPDATE	2023-01-03
External Id	SAMEA14085678
INSDC center alias	EBI
INSDC center name	European Bioinformatics Institute
INSDC first public	2023-01-03T00:33:21Z
INSDC last update	2023-01-03T00:33:21Z
INSDC status	public
Submitter Id	SRR3160452_bin.77_CONCOCT_v1.1_MAG
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	metaspadesv3.11.1
binning parameters	Default
binning software	CONCOCT v1.1
broker name	EMG broker account, EMBL-EBI
completeness score	98.39
completeness software	CheckM
contamination score	6.78
geographic location (latitude)	32.8094
geographic location (longitude)	-96.8365
metagenomic source	human gut metagenome
sample derived from	SAMN04480494
scientific_name	uncultured Collinsella sp.
sequencing method	Illumina HiSeq 2000
taxonomic identity marker	multi-marker approach

Description: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR3160452 of study SRP069867.