Metagenome-assembled genome: SRR3108064_bin.31_CON... - BioSample

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Result Filters

Organism: uncultured bacterium
cellular organisms; Bacteria; environmental samples

Attributes

collection date	not provided
broad-scale environmental context	Host-associated
local-scale environmental context	Human
environmental medium	Digestive system
geographic location	not provided
investigation type	metagenome-assembled genome
isolation source	human gut metagenome
project name	The goals of this study were to compare sequencing technology results and investigate their 16S rRNA gene and Metagenomic sequencing ability.
sample name	SRR3108064_bin.31_CONCOCT_v1.1_MAG
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2023-01-03
ENA-LAST-UPDATE	2023-01-03
External Id	SAMEA14085672
INSDC center alias	EBI
INSDC center name	European Bioinformatics Institute
INSDC first public	2023-01-03T00:33:18Z
INSDC last update	2023-01-03T00:33:18Z
INSDC status	public
Submitter Id	SRR3108064_bin.31_CONCOCT_v1.1_MAG
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	metaspadesv3.11.1
binning parameters	Default
binning software	CONCOCT v1.1
broker name	EMG broker account, EMBL-EBI
completeness score	89.74
completeness software	CheckM
contamination score	1.28
geographic location (latitude)	not provided
geographic location (longitude)	not provided
metagenomic source	human gut metagenome
sample derived from	SAMN04414078
scientific_name	uncultured bacterium
sequencing method	Illumina HiSeq 2000
taxonomic identity marker	multi-marker approach

Description: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR3108064 of study SRP068612.

BioProject: PRJEB51075 Large-scale analysis of novel cellular microbes from the human gut biome
Retrieve all samples from this project

Metagenome-assembled genome: SRR3108064_bin.31_CONCOCT_v1.1_MAG
Metagenome-assembled genome: SRR3108064_bin.31_CONCOCT_v1.1_MAG

biosample
Metagenome-assembled genome: ERR1190907_bin.6_CONCOCT_v1.1_MAG
Metagenome-assembled genome: ERR1190907_bin.6_CONCOCT_v1.1_MAG

biosample
MAG TPA_asm: uncultured Faecalibacterium sp. isolate ERR1600655_bin.52_CONCOCT_v...
MAG TPA_asm: uncultured Faecalibacterium sp. isolate ERR1600655_bin.52_CONCOCT_v1.1_MAG, whole genome shotgun sequencing project
gi|2424440508|tpe|CALCKA000000000.1 KA010000000

Nucleotide
MAG TPA_asm: Blastocystis sp. subtype 1, whole genome shotgun sequencing project
MAG TPA_asm: Blastocystis sp. subtype 1, whole genome shotgun sequencing project
gi|2426642611|tpe|CALMHR000000000.1 HR010000000

Nucleotide
MAG TPA_asm: uncultured Collinsella sp. isolate ERR912041_bin.89_CONCOCT_v1.1_MA...
MAG TPA_asm: uncultured Collinsella sp. isolate ERR912041_bin.89_CONCOCT_v1.1_MAG, whole genome shotgun sequencing project
gi|2423741177|tpe|CALFAX000000000.1 AX010000000

Nucleotide

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