Metagenome-assembled genome: SRR2938145_bin.51_CON... - BioSample

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Result Filters

Organism: uncultured Lachnoclostridium sp.
cellular organisms; Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Lachnoclostridium; environmental samples

Attributes

collection date	2013-01-07
broad-scale environmental context	Host-associated
local-scale environmental context	Human
environmental medium	Digestive system
geographic location	El Salvador
investigation type	metagenome-assembled genome
isolation source	human gut metagenome
project name	Microbiome and resistome of human fecal and environmental microbiota from rural El Salvador and peri-urban Lima, Peru
sample name	SRR2938145_bin.51_CONCOCT_v1.1_MAG
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2023-01-03
ENA-LAST-UPDATE	2023-01-03
External Id	SAMEA14085644
INSDC center alias	EBI
INSDC center name	European Bioinformatics Institute
INSDC first public	2023-01-03T00:33:08Z
INSDC last update	2023-01-03T00:33:08Z
INSDC status	public
Submitter Id	SRR2938145_bin.51_CONCOCT_v1.1_MAG
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	metaspadesv3.12.0
binning parameters	Default
binning software	CONCOCT v1.1
broker name	EMG broker account, EMBL-EBI
completeness score	80.75
completeness software	CheckM
contamination score	1.34
geographic location (latitude)	not provided
geographic location (longitude)	not provided
metagenomic source	human gut metagenome
sample derived from	SAMN04261158
scientific_name	uncultured Lachnoclostridium sp.
sequencing method	Illumina HiSeq 2500
taxonomic identity marker	multi-marker approach

Description: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR2938145 of study SRP066479.

BioProject: PRJEB51075 Large-scale analysis of novel cellular microbes from the human gut biome
Retrieve all samples from this project

Metagenome-assembled genome: SRR2938145_bin.51_CONCOCT_v1.1_MAG
Metagenome-assembled genome: SRR2938145_bin.51_CONCOCT_v1.1_MAG

biosample
MAG TPA_asm: Lelliottia amnigena isolate ERR1430553_bin.131_CONCOCT_v1.1_MAG, wh...
MAG TPA_asm: Lelliottia amnigena isolate ERR1430553_bin.131_CONCOCT_v1.1_MAG, whole genome shotgun sequencing project
gi|2426031587|tpe|CALHTW000000000.1 TW010000000

Nucleotide
MAG TPA_asm: uncultured Clostridium sp. isolate ERR260224_bin.15_CONCOCT_v1.1_MA...
MAG TPA_asm: uncultured Clostridium sp. isolate ERR260224_bin.15_CONCOCT_v1.1_MAG, whole genome shotgun sequencing project
gi|2424686277|tpe|CALITY000000000.1 TY010000000

Nucleotide
MAG TPA_asm: uncultured Clostridia bacterium isolate ERR1430430_bin.66_CONCOCT_v...
MAG TPA_asm: uncultured Clostridia bacterium isolate ERR1430430_bin.66_CONCOCT_v1.1_MAG, whole genome shotgun sequencing project
gi|2424298986|tpe|CALJCZ000000000.1 CZ010000000

Nucleotide
MAG TPA_asm: uncultured Collinsella sp. isolate ERR1600746_bin.67_CONCOCT_v1.1_M...
MAG TPA_asm: uncultured Collinsella sp. isolate ERR1600746_bin.67_CONCOCT_v1.1_MAG, whole genome shotgun sequencing project
gi|2423840868|tpe|CALCKK000000000.1 KK010000000

Nucleotide

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