Metagenome-assembled genome: SRR2912779_bin.5_CONC... - BioSample

Warning: The NCBI web site requires JavaScript to function. more...

Result Filters

Organism: uncultured Megasphaera sp.
cellular organisms; Bacteria; Bacillati; Bacillota; Negativicutes; Veillonellales; Veillonellaceae; Megasphaera; environmental samples

Attributes

collection date	not provided
broad-scale environmental context	Host-associated
local-scale environmental context	Human
environmental medium	Digestive system
geographic location	USA
investigation type	metagenome-assembled genome
isolation source	human gut metagenome
project name	Gut microbiome diversity among the Cheyenne &amp; Arapaho of Oklahoma
sample name	SRR2912779_bin.5_CONCOCT_v1.1_MAG
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2023-01-03
ENA-LAST-UPDATE	2023-01-03
External Id	SAMEA14085629
INSDC center alias	EBI
INSDC center name	European Bioinformatics Institute
INSDC first public	2023-01-03T00:33:45Z
INSDC last update	2023-01-03T00:33:45Z
INSDC status	public
Submitter Id	SRR2912779_bin.5_CONCOCT_v1.1_MAG
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	spades_v3.11.1
binning parameters	Default
binning software	CONCOCT v1.1
broker name	EMG broker account, EMBL-EBI
completeness score	99.4
completeness software	CheckM
contamination score	0.0
geographic location (latitude)	not provided
geographic location (longitude)	not provided
metagenomic source	human gut metagenome
sample derived from	SAMN04209230
scientific_name	uncultured Megasphaera sp.
sequencing method	Illumina HiSeq 2000
taxonomic identity marker	multi-marker approach

Description: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR2912779 of study SRP066053.

BioProject: PRJEB51075 Large-scale analysis of novel cellular microbes from the human gut biome
Retrieve all samples from this project

Metagenome-assembled genome: SRR2912779_bin.5_CONCOCT_v1.1_MAG
Metagenome-assembled genome: SRR2912779_bin.5_CONCOCT_v1.1_MAG

biosample
Metagenome-assembled genome: SRR2938145_bin.51_CONCOCT_v1.1_MAG
Metagenome-assembled genome: SRR2938145_bin.51_CONCOCT_v1.1_MAG

biosample
MAG TPA_asm: Lelliottia amnigena isolate ERR1430553_bin.131_CONCOCT_v1.1_MAG, wh...
MAG TPA_asm: Lelliottia amnigena isolate ERR1430553_bin.131_CONCOCT_v1.1_MAG, whole genome shotgun sequencing project
gi|2426031587|tpe|CALHTW000000000.1 TW010000000

Nucleotide
MAG TPA_asm: uncultured Clostridium sp. isolate ERR260224_bin.15_CONCOCT_v1.1_MA...
MAG TPA_asm: uncultured Clostridium sp. isolate ERR260224_bin.15_CONCOCT_v1.1_MAG, whole genome shotgun sequencing project
gi|2424686277|tpe|CALITY000000000.1 TY010000000

Nucleotide
MAG TPA_asm: uncultured Clostridia bacterium isolate ERR1430430_bin.66_CONCOCT_v...
MAG TPA_asm: uncultured Clostridia bacterium isolate ERR1430430_bin.66_CONCOCT_v1.1_MAG, whole genome shotgun sequencing project
gi|2424298986|tpe|CALJCZ000000000.1 CZ010000000

Nucleotide

Your browsing activity is empty.

Activity recording is turned off.

You are here: NCBI > DNA & RNA > BioSample