Metagenome-assembled genome: SRR2846706_bin.202_CO... - BioSample

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Result Filters

Organism: Slackia isoflavoniconvertens
cellular organisms; Bacteria; Bacillati; Actinomycetota; Coriobacteriia; Eggerthellales; Eggerthellaceae; Slackia

Attributes

collection date	2011-01-01
broad-scale environmental context	Host-associated
local-scale environmental context	Human
environmental medium	Digestive system
geographic location	USA
investigation type	metagenome-assembled genome
isolation source	human gut metagenome
project name	metagenomics samples from a probiotic study of the eldery.
sample name	SRR2846706_bin.202_CONCOCT_v1.1_MAG
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2023-01-03
ENA-LAST-UPDATE	2023-01-03
External Id	SAMEA14085613
INSDC center alias	EBI
INSDC center name	European Bioinformatics Institute
INSDC first public	2023-01-03T00:33:39Z
INSDC last update	2023-01-03T00:33:39Z
INSDC status	public
Submitter Id	SRR2846706_bin.202_CONCOCT_v1.1_MAG
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	metaspadesv3.10.0
binning parameters	Default
binning software	CONCOCT v1.1
broker name	EMG broker account, EMBL-EBI
completeness score	100
completeness software	CheckM
contamination score	0.0
geographic location (latitude)	42.3601
geographic location (longitude)	-71.0589
metagenomic source	human gut metagenome
sample derived from	SAMN04158616
scientific_name	Slackia isoflavoniconvertens
sequencing method	Illumina HiSeq 2000
taxonomic identity marker	multi-marker approach

Description: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR2846706 of study SRP065270.

BioProject: PRJEB51075 Large-scale analysis of novel cellular microbes from the human gut biome
Retrieve all samples from this project

Metagenome-assembled genome: SRR2846706_bin.202_CONCOCT_v1.1_MAG
Metagenome-assembled genome: SRR2846706_bin.202_CONCOCT_v1.1_MAG

biosample
Metagenome-assembled genome: ERR2619743_bin.102_CONCOCT_v1.1_MAG
Metagenome-assembled genome: ERR2619743_bin.102_CONCOCT_v1.1_MAG

biosample
MAG TPA_asm: uncultured Clostridium sp. isolate ERR3160563_bin.18_CONCOCT_v1.1_M...
MAG TPA_asm: uncultured Clostridium sp. isolate ERR3160563_bin.18_CONCOCT_v1.1_MAG, whole genome shotgun sequencing project
gi|2423218275|tpe|CALBDI000000000.1 DI010000000

Nucleotide
MAG TPA_asm: uncultured Eggerthella sp. isolate ERR2619747_bin.25_CONCOCT_v1.1_M...
MAG TPA_asm: uncultured Eggerthella sp. isolate ERR2619747_bin.25_CONCOCT_v1.1_MAG, whole genome shotgun sequencing project
gi|2423555259|tpe|CALFAE000000000.1 AE010000000

Nucleotide
Metagenome-assembled genome: SRR2992898_bin.86_CONCOCT_v1.1_MAG
Metagenome-assembled genome: SRR2992898_bin.86_CONCOCT_v1.1_MAG

biosample

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