Metagenome-assembled genome: SRR1761712_bin.14_CON... - BioSample

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Result Filters

Organism: uncultured Ruminococcus sp.
cellular organisms; Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Ruminococcus; environmental samples

Attributes

collection date	2012-01-01
broad-scale environmental context	Host-associated
local-scale environmental context	Human
environmental medium	Digestive system
geographic location	Peru
investigation type	metagenome-assembled genome
isolation source	human gut metagenome
project name	Gut microbiome diversity
sample name	SRR1761712_bin.14_CONCOCT_v1.1_MAG
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2023-01-03
ENA-LAST-UPDATE	2023-01-03
External Id	SAMEA14085564
INSDC center alias	EBI
INSDC center name	European Bioinformatics Institute
INSDC first public	2023-01-03T00:33:16Z
INSDC last update	2023-01-03T00:33:16Z
INSDC status	public
Submitter Id	SRR1761712_bin.14_CONCOCT_v1.1_MAG
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	metaspadesv3.10.0
binning parameters	Default
binning software	CONCOCT v1.1
broker name	EMG broker account, EMBL-EBI
completeness score	96.42
completeness software	CheckM
contamination score	0.0
geographic location (latitude)	-5.68
geographic location (longitude)	-73.33
metagenomic source	human gut metagenome
sample derived from	SAMN03283285
scientific_name	uncultured Ruminococcus sp.
sequencing method	Illumina HiSeq 2500
taxonomic identity marker	multi-marker approach

Description: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR1761712 of study SRP052307.

BioProject: PRJEB51075 Large-scale analysis of novel cellular microbes from the human gut biome
Retrieve all samples from this project

Metagenome-assembled genome: SRR1761712_bin.14_CONCOCT_v1.1_MAG
Metagenome-assembled genome: SRR1761712_bin.14_CONCOCT_v1.1_MAG

biosample
Metagenome-assembled genome: ERR2619738_bin.45_CONCOCT_v1.1_MAG
Metagenome-assembled genome: ERR2619738_bin.45_CONCOCT_v1.1_MAG

biosample
MAG TPA_asm: uncultured Clostridia bacterium isolate ERR911989_bin.25_CONCOCT_v1...
MAG TPA_asm: uncultured Clostridia bacterium isolate ERR911989_bin.25_CONCOCT_v1.1_MAG, whole genome shotgun sequencing project
gi|2424449568|tpe|CALLNF000000000.1 NF010000000

Nucleotide
MAG TPA_asm: uncultured Lachnotalea sp. isolate ERR260181_bin.97_CONCOCT_v1.1_MA...
MAG TPA_asm: uncultured Lachnotalea sp. isolate ERR260181_bin.97_CONCOCT_v1.1_MAG, whole genome shotgun sequencing project
gi|2426128990|tpe|CALJPY000000000.1 PY010000000

Nucleotide
Metagenome-assembled genome: SRR7658676_bin.36_CONCOCT_v1.1_MAG
Metagenome-assembled genome: SRR7658676_bin.36_CONCOCT_v1.1_MAG

biosample

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