Metagenome-assembled genome: ERR525959_bin.3_CONCO... - BioSample

Warning: The NCBI web site requires JavaScript to function. more...

Result Filters

Metagenome-assembled genome: ERR525959_bin.3_CONCOCT_v1.1_MAG

Identifiers: BioSample: SAMEA14084471; SRA: ERS11687604

Organism: uncultured Mycoplasma sp.
cellular organisms; Bacteria; Bacillati; Mycoplasmatota; Mollicutes; Mycoplasmatales; Mycoplasmataceae; Mycoplasma; environmental samples

Attributes

collection date	2008-01-01
broad-scale environmental context	Host-associated
local-scale environmental context	Human
environmental medium	Digestive system
geographic location	Denmark
investigation type	metagenome-assembled genome
isolation source	human gut metagenome
project name	The gastrointestinal tracts of mammalians are sterile in utero and colonized by microorganisms immediately after delivery. The subsequent development of the infant gut microbiota involves a complex succession of microbes, driven by factors such as gestational age, mode of delivery, antibiotic use, hygiene, geographical zone and type of feeding.
sample name	ERR525959_bin.3_CONCOCT_v1.1_MAG
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2023-01-03
ENA-LAST-UPDATE	2023-01-03
External Id	SAMEA14084471
INSDC center alias	EBI
INSDC center name	European Bioinformatics Institute
INSDC first public	2023-01-03T00:33:10Z
INSDC last update	2023-01-03T00:33:10Z
INSDC status	public
Submitter Id	ERR525959_bin.3_CONCOCT_v1.1_MAG
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	metaspadesv3.10.0
binning parameters	Default
binning software	CONCOCT v1.1
broker name	EMG broker account, EMBL-EBI
completeness score	93.54
completeness software	CheckM
contamination score	5.62
geographic location (latitude)	40.416634
geographic location (longitude)	-3.7037659
metagenomic source	human gut metagenome
sample derived from	SAMEA2580176
scientific_name	uncultured Mycoplasma sp.
sequencing method	Illumina HiSeq 2000
taxonomic identity marker	multi-marker approach

Description: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR525959 of study ERP005989.