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Metagenome-assembled genome: ERR3160560_bin.71_CONCOCT_v1.1_MAG

Identifiers
BioSample: SAMEA14084172; SRA: ERS11687305
Organism
uncultured Psychrobacter sp.
cellular organisms; Bacteria; Pseudomonadota; Gammaproteobacteria; Moraxellales; Moraxellaceae; Psychrobacter; environmental samples
Attributes
collection datenot provided
broad-scale environmental contextHost-associated
local-scale environmental contextHuman
environmental mediumDigestive system
geographic locationnot provided
investigation typemetagenome-assembled genome
isolation sourcehuman gut metagenome
project nameWe carried out an intervention study on six obesity patients using a traditional PFE for 4 weeks. Significant weight losses were observed on all subjects after intervention. Fecal microbial metagenomic sequencing and metabolomics profiling were performed before and after the intervention, by which we identified several coordinated changes on the gut microbial community and metabolites probably responsible for the cause of weight loss
sample nameERR3160560_bin.71_CONCOCT_v1.1_MAG
ENA-CHECKLISTERC000047
ENA-FIRST-PUBLIC2023-01-03
ENA-LAST-UPDATE2023-01-03
External IdSAMEA14084172
INSDC center aliasEBI
INSDC center nameEuropean Bioinformatics Institute
INSDC first public2023-01-03T00:33:09Z
INSDC last update2023-01-03T00:33:09Z
INSDC statuspublic
Submitter IdERR3160560_bin.71_CONCOCT_v1.1_MAG
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwaremetaspades_v3.13.0
binning parametersDefault
binning softwareCONCOCT v1.1
broker nameEMG broker account, EMBL-EBI
completeness score87.32
completeness softwareCheckM
contamination score2.77
geographic location (latitude)not provided
geographic location (longitude)not provided
metagenomic sourcehuman gut metagenome
sample derived fromSAMEA5357961
scientific_nameuncultured Psychrobacter sp.
sequencing methodIllumina HiSeq 2000
taxonomic identity markermulti-marker approach
Description

This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR3160560 of study ERP113515.

BioProject
PRJEB51075 Large-scale analysis of novel cellular microbes from the human gut biome
Retrieve all samples from this project

Submission
EBI; 2023-01-04
Accession:
SAMEA14084172
ID:
32560800

BioProject Nucleotide

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