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Metagenome-assembled genome: ERR2764965_bin.75_CONCOCT_v1.1_MAG

Identifiers
BioSample: SAMEA14084163; SRA: ERS11687296
Organism
Prevotella dentalis
cellular organisms; Bacteria; FCB group; Bacteroidota/Chlorobiota group; Bacteroidota; Bacteroidia; Bacteroidales; Prevotellaceae; Prevotella
Attributes
collection date2004-01-01
broad-scale environmental contextHost-associated
local-scale environmental contextHuman
environmental mediumDigestive system
geographic locationFrance
investigation typemetagenome-assembled genome
isolation sourcehuman gut metagenome
project nameSeveral diseases have been associated with with shifts in the salivary microbiome. Here we explore such links in a case control cohort for colorectal cancer (see PMID:25432777, BioProject ERP005534 for matched fecal samples), amended by an independent time series of healthy controls (see PMID:25888008, BioProject ERP009422 for matched fecal samples).
sample nameERR2764965_bin.75_CONCOCT_v1.1_MAG
ENA-CHECKLISTERC000047
ENA-FIRST-PUBLIC2023-01-03
ENA-LAST-UPDATE2023-01-03
External IdSAMEA14084163
INSDC center aliasEBI
INSDC center nameEuropean Bioinformatics Institute
INSDC first public2023-01-03T00:33:47Z
INSDC last update2023-01-03T00:33:47Z
INSDC statuspublic
Submitter IdERR2764965_bin.75_CONCOCT_v1.1_MAG
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwaremetaSPAdes v3.14.1
binning parametersDefault
binning softwareCONCOCT v1.1
broker nameEMG broker account, EMBL-EBI
completeness score95.19
completeness softwareCheckM
contamination score3.04
geographic location (latitude)48.79
geographic location (longitude)2.4556
metagenomic sourcehuman gut metagenome
sample derived fromSAMEA4873340
scientific_namePrevotella dentalis
sequencing methodIllumina HiSeq 2000
taxonomic identity markermulti-marker approach
Description

This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR2764965 of study ERP110622.

BioProject
PRJEB51075 Large-scale analysis of novel cellular microbes from the human gut biome
Retrieve all samples from this project

Submission
EBI; 2023-01-04
Accession:
SAMEA14084163
ID:
32560791

BioProject Nucleotide

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