U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Metagenome-assembled genome: ERR2619745_bin.0_CONCOCT_v1.1_MAG

Identifiers
BioSample: SAMEA14084143; SRA: ERS11687276
Organism
uncultured Eubacterium sp.
cellular organisms; Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Eubacteriaceae; Eubacterium; environmental samples
Attributes
collection date2013-10-01
broad-scale environmental contextHost-associated
local-scale environmental contextHuman
environmental mediumDigestive system
geographic locationCameroon
investigation typemetagenome-assembled genome
isolation sourcehuman gut metagenome
project nameIn order to examine how the subsistence mode affects the human gut microbiome, we analyzed faecal metagenomes of 58 healthy adults from Cameroon (hunter-gatherers, farmers and fishers).Our aim is to describe taxonomical and functional diversity, as well as to unveil the interactions between the eukaryotic and prokaryotic componenet of the gut microbiome.
sample nameERR2619745_bin.0_CONCOCT_v1.1_MAG
ENA-CHECKLISTERC000047
ENA-FIRST-PUBLIC2023-01-03
ENA-LAST-UPDATE2023-01-03
External IdSAMEA14084143
INSDC center aliasEBI
INSDC center nameEuropean Bioinformatics Institute
INSDC first public2023-01-03T00:33:38Z
INSDC last update2023-01-03T00:33:38Z
INSDC statuspublic
Submitter IdERR2619745_bin.0_CONCOCT_v1.1_MAG
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwaremetaspadesv3.13.0
binning parametersDefault
binning softwareCONCOCT v1.1
broker nameEMG broker account, EMBL-EBI
completeness score98.66
completeness softwareCheckM
contamination score0.0
geographic location (latitude)2.5649655
geographic location (longitude)9.825212
metagenomic sourcehuman gut metagenome
sample derived fromSAMEA4719798
scientific_nameuncultured Eubacterium sp.
sequencing methodIllumina HiSeq 2000
taxonomic identity markermulti-marker approach
Description

This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR2619745 of study ERP109040.

BioProject
PRJEB51075 Large-scale analysis of novel cellular microbes from the human gut biome
Retrieve all samples from this project

Submission
EBI; 2023-01-04
Accession:
SAMEA14084143
ID:
32560771

BioProject Nucleotide

Supplemental Content

Related information

Recent activity

Clear Turn Off Turn On

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...
You are here: NCBI > DNA & RNA > BioSample
Support Center