Metagenome-assembled genome: ERR2619711_bin.0_CONC... - BioSample

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Metagenome-assembled genome: ERR2619711_bin.0_CONCOCT_v1.1_MAG

Identifiers: BioSample: SAMEA14084072; SRA: ERS11687205

Organism: uncultured Alphaproteobacteria bacterium
cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria; environmental samples

Attributes

collection date	2013-10-01
broad-scale environmental context	Host-associated
local-scale environmental context	Human
environmental medium	Digestive system
geographic location	Cameroon
investigation type	metagenome-assembled genome
isolation source	human gut metagenome
project name	In order to examine how the subsistence mode affects the human gut microbiome, we analyzed faecal metagenomes of 58 healthy adults from Cameroon (hunter-gatherers, farmers and fishers).Our aim is to describe taxonomical and functional diversity, as well as to unveil the interactions between the eukaryotic and prokaryotic componenet of the gut microbiome.
sample name	ERR2619711_bin.0_CONCOCT_v1.1_MAG
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2023-01-03
ENA-LAST-UPDATE	2023-01-03
External Id	SAMEA14084072
INSDC center alias	EBI
INSDC center name	European Bioinformatics Institute
INSDC first public	2023-01-03T00:33:07Z
INSDC last update	2023-01-03T00:33:07Z
INSDC status	public
Submitter Id	ERR2619711_bin.0_CONCOCT_v1.1_MAG
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	metaspadesv3.13.0
binning parameters	Default
binning software	CONCOCT v1.1
broker name	EMG broker account, EMBL-EBI
completeness score	90.86
completeness software	CheckM
contamination score	2.21
geographic location (latitude)	3.0143206
geographic location (longitude)	10.103191
metagenomic source	human gut metagenome
sample derived from	SAMEA4719764
scientific_name	uncultured Alphaproteobacteria bacterium
sequencing method	Illumina HiSeq 2000
taxonomic identity marker	multi-marker approach

Description: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR2619711 of study ERP109040.