Metagenome-assembled genome: ERR260179_bin.14_CONC... - BioSample

Warning: The NCBI web site requires JavaScript to function. more...

Result Filters

Organism: uncultured Collinsella sp.
cellular organisms; Bacteria; Bacillati; Actinomycetota; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella; environmental samples

Attributes

collection date	not provided
broad-scale environmental context	Host-associated
local-scale environmental context	Human
environmental medium	Digestive system
geographic location	not provided
investigation type	metagenome-assembled genome
isolation source	human gut metagenome
project name	Gut metagenome in European women with normal, impaired and diabetic glucose control
sample name	ERR260179_bin.14_CONCOCT_v1.1_MAG
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2023-01-03
ENA-LAST-UPDATE	2023-01-03
External Id	SAMEA14084028
INSDC center alias	EBI
INSDC center name	European Bioinformatics Institute
INSDC first public	2023-01-03T00:33:33Z
INSDC last update	2023-01-03T00:33:33Z
INSDC status	public
Submitter Id	ERR260179_bin.14_CONCOCT_v1.1_MAG
assembly quality	Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs
assembly software	metaspades_v3.13.0
binning parameters	Default
binning software	CONCOCT v1.1
broker name	EMG broker account, EMBL-EBI
completeness score	100
completeness software	CheckM
contamination score	1.61
geographic location (latitude)	not provided
geographic location (longitude)	not provided
metagenomic source	human gut metagenome
sample derived from	SAMEA1906442
scientific_name	uncultured Collinsella sp.
sequencing method	Illumina HiSeq 2000
taxonomic identity marker	multi-marker approach

Description: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR260179 of study ERP002469.

BioProject: PRJEB51075 Large-scale analysis of novel cellular microbes from the human gut biome
Retrieve all samples from this project

Metagenome-assembled genome: ERR260179_bin.14_CONCOCT_v1.1_MAG
Metagenome-assembled genome: ERR260179_bin.14_CONCOCT_v1.1_MAG

biosample
Metagenome-assembled genome: ERR321626_bin.81_CONCOCT_v1.1_MAG
Metagenome-assembled genome: ERR321626_bin.81_CONCOCT_v1.1_MAG

biosample
MAG TPA_asm: uncultured Desulfovibrio sp. isolate SRR5091531_bin.44_CONCOCT_v1.1...
MAG TPA_asm: uncultured Desulfovibrio sp. isolate SRR5091531_bin.44_CONCOCT_v1.1_MAG, whole genome shotgun sequencing project
gi|2424488619|tpe|CALKAV000000000.1 AV010000000

Nucleotide
small ribosomal subunit protein mS25 [Homo sapiens]
small ribosomal subunit protein mS25 [Homo sapiens]
gi|14028877|ref|NP_071942.1|

Protein

Your browsing activity is empty.

Activity recording is turned off.

You are here: NCBI > DNA & RNA > BioSample