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Metagenome-assembled genome: ERR1953519_bin.0_CONCOCT_v1.1_MAG

Identifiers
BioSample: SAMEA14083861; SRA: ERS11686995
Organism
uncultured Clostridia bacterium
cellular organisms; Bacteria; Bacillati; Bacillota; Clostridia; environmental samples
Attributes
collection datenot provided
broad-scale environmental contextHost-associated
local-scale environmental contextHuman
environmental mediumDigestive system
geographic locationnot provided
investigation typemetagenome-assembled genome
isolation sourcehuman gut metagenome
project nameWe believe spore forming bacteria could play a key role in maintaining the integrity of the intestinal microbiota. Transmission of spore-formers could help promote a high level of diversity within the intestinal microbiota. In addition, due to their robust nature, spore formers could also provide a means of resilience when the community is challenged. To investigate the role of intestinal spore forming bacteria in the microbiota we wish to perform metagenomic sequencing of the microbiota obtained from faecal samples from 6 healthy human donors. By comparing the data generated with previously generated data from the same donors we can start to understand the dynamics of the spore forming bacteria over time.
sample nameERR1953519_bin.0_CONCOCT_v1.1_MAG
ENA-CHECKLISTERC000047
ENA-FIRST-PUBLIC2023-01-03
ENA-LAST-UPDATE2023-01-03
External IdSAMEA14083861
INSDC center aliasEBI
INSDC center nameEuropean Bioinformatics Institute
INSDC first public2023-01-03T00:33:17Z
INSDC last update2023-01-03T00:33:17Z
INSDC statuspublic
Submitter IdERR1953519_bin.0_CONCOCT_v1.1_MAG
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwaremetaspadesv3.10.0
binning parametersDefault
binning softwareCONCOCT v1.1
broker nameEMG broker account, EMBL-EBI
completeness score97.98
completeness softwareCheckM
contamination score0.81
geographic location (latitude)not provided
geographic location (longitude)not provided
metagenomic sourcehuman gut metagenome
sample derived fromSAMEA4384402
scientific_nameuncultured Clostridia bacterium
sequencing methodIllumina HiSeq 2500
taxonomic identity markermulti-marker approach
Description

This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR1953519 of study ERP022699.

BioProject
PRJEB51075 Large-scale analysis of novel cellular microbes from the human gut biome
Retrieve all samples from this project

Submission
EBI; 2023-01-04
Accession:
SAMEA14083861
ID:
32560490

BioProject Nucleotide

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