Metagenome-assembled genome: ERR1600705_bin.161_CO... - BioSample

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Result Filters

Organism: uncultured Desulfovibrio sp.
cellular organisms; Bacteria; Thermodesulfobacteriota; Desulfovibrionia; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio; environmental samples

Attributes

collection date	2016-01-01
broad-scale environmental context	Host-associated
local-scale environmental context	Human
environmental medium	Digestive system
geographic location	China
investigation type	metagenome-assembled genome
isolation source	human gut metagenome
project name	T2D patients were randomly divided into two groups receiving WTP diet or usual care. The gut microbiota changed and the host clinical parameters were improved. Several key bacteria were identified.
sample name	ERR1600705_bin.161_CONCOCT_v1.1_MAG
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2023-01-03
ENA-LAST-UPDATE	2023-01-03
External Id	SAMEA14083783
INSDC center alias	EBI
INSDC center name	European Bioinformatics Institute
INSDC first public	2023-01-03T00:33:25Z
INSDC last update	2023-01-03T00:33:25Z
INSDC status	public
Submitter Id	ERR1600705_bin.161_CONCOCT_v1.1_MAG
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	metaspades_v3.13.0
binning parameters	Default
binning software	CONCOCT v1.1
broker name	EMG broker account, EMBL-EBI
completeness score	96.15
completeness software	CheckM
contamination score	0.0
geographic location (latitude)	not provided
geographic location (longitude)	not provided
metagenomic source	human gut metagenome
sample derived from	SAMEA4385563
scientific_name	uncultured Desulfovibrio sp.
sequencing method	Illumina HiSeq 2500
taxonomic identity marker	multi-marker approach

Description: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR1600705 of study ERP016884.

BioProject: PRJEB51075 Large-scale analysis of novel cellular microbes from the human gut biome
Retrieve all samples from this project

Metagenome-assembled genome: ERR1600705_bin.161_CONCOCT_v1.1_MAG
Metagenome-assembled genome: ERR1600705_bin.161_CONCOCT_v1.1_MAG

biosample
MAG TPA_asm: uncultured Actinomyces sp. isolate ERR589658_bin.20_CONCOCT_v1.1_MA...
MAG TPA_asm: uncultured Actinomyces sp. isolate ERR589658_bin.20_CONCOCT_v1.1_MAG, whole genome shotgun sequencing project
gi|2424570028|tpe|CALAIK000000000.1 IK010000000

Nucleotide
MAG TPA_asm: uncultured Treponema sp. isolate ERR2764965_bin.24_CONCOCT_v1.1_MAG...
MAG TPA_asm: uncultured Treponema sp. isolate ERR2764965_bin.24_CONCOCT_v1.1_MAG, whole genome shotgun sequencing project
gi|2423606024|tpe|CALEWR000000000.1 WR010000000

Nucleotide
Metagenome-assembled genome: ERR2198623_bin.28_CONCOCT_v1.1_MAG
Metagenome-assembled genome: ERR2198623_bin.28_CONCOCT_v1.1_MAG

biosample
Metagenome-assembled genome: ERR1600702_bin.22_CONCOCT_v1.1_MAG
Metagenome-assembled genome: ERR1600702_bin.22_CONCOCT_v1.1_MAG

biosample

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