Metagenome-assembled genome: ERR1474569_bin.23_CON... - BioSample

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Result Filters

Organism: uncultured Rothia sp.
cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Micrococcales; Micrococcaceae; Rothia; environmental samples

Attributes

collection date	2014-01-01
broad-scale environmental context	Host-associated
local-scale environmental context	Human
environmental medium	Digestive system
geographic location	Philippines
investigation type	metagenome-assembled genome
isolation source	human gut metagenome
project name	Metagenomic sequencing of saliva samples from individuals with hunter-gatherer or agriculturalist lifestyles from locations in the Philippines.
sample name	ERR1474569_bin.23_CONCOCT_v1.1_MAG
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2023-01-03
ENA-LAST-UPDATE	2023-01-03
External Id	SAMEA14083592
INSDC center alias	EBI
INSDC center name	European Bioinformatics Institute
INSDC first public	2023-01-03T00:33:25Z
INSDC last update	2023-01-03T00:33:25Z
INSDC status	public
Submitter Id	ERR1474569_bin.23_CONCOCT_v1.1_MAG
assembly quality	Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs
assembly software	SPAdes genome assembler v3.11.1
binning parameters	Default
binning software	CONCOCT v1.1
broker name	EMG broker account, EMBL-EBI
completeness score	93.22
completeness software	CheckM
contamination score	3.56
geographic location (latitude)	12.9
geographic location (longitude)	121.8
metagenomic source	human gut metagenome
sample derived from	SAMEA4031757
scientific_name	uncultured Rothia sp.
sequencing method	Illumina HiSeq 2500
taxonomic identity marker	multi-marker approach

Description: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR1474569 of study ERP016024.