Metagenome-assembled genome: ERR1305900_bin.33_CON... - BioSample

Warning: The NCBI web site requires JavaScript to function. more...

Result Filters

Metagenome-assembled genome: ERR1305900_bin.33_CONCOCT_v1.1_MAG

Identifiers: BioSample: SAMEA14083439; SRA: ERS11686573

Organism: uncultured Ruminococcus sp.
cellular organisms; Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Ruminococcus; environmental samples

Attributes

collection date	2010-01-01
broad-scale environmental context	Host-associated
local-scale environmental context	Human
environmental medium	Digestive system
geographic location	Denmark
investigation type	metagenome-assembled genome
isolation source	human gut metagenome
project name	Roux-en-Y gastric bypass (RYGB) is an effective means to achieve sustained weight loss for morbidly obese individuals. Besides rapid weight reduction, patients achieve major improvements of insulin sensitivity and glucose homeostasis. Dysbiosis of gut microbiota has been associated with obesity and some of its co-morbidities like type 2 diabetes, and major changes of gut bacterial communities have been hypothesized to mediate part of the beneficial metabolic effects observed after RYGB. This study we describe changes in gut microbial taxonomic composition and functional potential following RYGB.
sample name	ERR1305900_bin.33_CONCOCT_v1.1_MAG
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2023-01-03
ENA-LAST-UPDATE	2023-01-03
External Id	SAMEA14083439
INSDC center alias	EBI
INSDC center name	European Bioinformatics Institute
INSDC first public	2023-01-03T00:33:09Z
INSDC last update	2023-01-03T00:33:09Z
INSDC status	public
Submitter Id	ERR1305900_bin.33_CONCOCT_v1.1_MAG
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	spades_v3.11.1
binning parameters	Default
binning software	CONCOCT v1.1
broker name	EMG broker account, EMBL-EBI
completeness score	97.74
completeness software	CheckM
contamination score	0.86
geographic location (latitude)	55.65
geographic location (longitude)	12.47
metagenomic source	human gut metagenome
sample derived from	SAMEA3888925
scientific_name	uncultured Ruminococcus sp.
sequencing method	Illumina HiSeq 2000
taxonomic identity marker	multi-marker approach

Description: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR1305900 of study ERP014480.