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Metagenome-assembled genome: ERR1297726_bin.17_CONCOCT_v1.1_MAG

Identifiers
BioSample: SAMEA14083412; SRA: ERS11686546
Organism
uncultured Negativicutes bacterium
cellular organisms; Bacteria; Bacillati; Bacillota; Negativicutes; environmental samples
Attributes
collection date2009-01-01
broad-scale environmental contextHost-associated
local-scale environmental contextHuman
environmental mediumDigestive system
geographic locationNetherlands
investigation typemetagenome-assembled genome
isolation sourcehuman gut metagenome
project nameTen individuals with metabolic syndrome underwent a single faecal microbiota transplantation (FMT): 5 of which were allogenic, the other 5 autologous. Stool samples were collected before FMT (day 0) and days 2, 14, 42 and 84 after FMT; and from the donor before FMT. Metagenomic shotgun sequencing was performed on all samples.
sample nameERR1297726_bin.17_CONCOCT_v1.1_MAG
ENA-CHECKLISTERC000047
ENA-FIRST-PUBLIC2023-01-03
ENA-LAST-UPDATE2023-01-03
External IdSAMEA14083412
INSDC center aliasEBI
INSDC center nameEuropean Bioinformatics Institute
INSDC first public2023-01-03T00:33:37Z
INSDC last update2023-01-03T00:33:37Z
INSDC statuspublic
Submitter IdERR1297726_bin.17_CONCOCT_v1.1_MAG
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwarespades_v3.11.1
binning parametersDefault
binning softwareCONCOCT v1.1
broker nameEMG broker account, EMBL-EBI
completeness score98.66
completeness softwareCheckM
contamination score0.0
geographic location (latitude)52.0
geographic location (longitude)5.0
metagenomic sourcehuman gut metagenome
sample derived fromSAMEA3882542
scientific_nameuncultured Negativicutes bacterium
sequencing methodIllumina HiSeq 2000
taxonomic identity markermulti-marker approach
Description

This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run ERR1297726 of study ERP013827.

BioProject
PRJEB51075 Large-scale analysis of novel cellular microbes from the human gut biome
Retrieve all samples from this project

Submission
EBI; 2023-01-04
Accession:
SAMEA14083412
ID:
32560028

BioProject Nucleotide

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