Metagenome-assembled genome: SRR7515931_bin.142_CO... - BioSample

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Result Filters

Organism: uncultured bacterium
cellular organisms; Bacteria; environmental samples

Attributes

collection date	2016-02-17
broad-scale environmental context	Engineered
local-scale environmental context	Engineered
environmental medium	Engineered
geographic location	Saudi Arabia
investigation type	metagenome-assembled genome
isolation source	metagenome
project name	This project aims to understand the microbial community and its functional potential of biofouled reverse osmosis membranes used in water purification.
sample name	SRR7515931_bin.142_CONCOCT_v1.1_MAG
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2023-01-03
ENA-LAST-UPDATE	2023-01-03
External Id	SAMEA14082578
INSDC center alias	EBI
INSDC center name	European Bioinformatics Institute
INSDC first public	2023-01-03T00:32:29Z
INSDC last update	2023-01-03T00:32:29Z
INSDC status	public
Submitter Id	SRR7515931_bin.142_CONCOCT_v1.1_MAG
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	metaspadesv3.12.0
binning parameters	Default
binning software	CONCOCT v1.1
broker name	EMG broker account, EMBL-EBI
completeness score	54.93
completeness software	CheckM
contamination score	0.0
geographic location (latitude)	22.299927
geographic location (longitude)	39.116756
metagenomic source	metagenome
sample derived from	SAMN09650986
scientific_name	uncultured bacterium
sequencing method	Illumina HiSeq 4000
taxonomic identity marker	multi-marker approach

Description: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR7515931 of study SRP153197.

BioProject: PRJEB51072 Large-scale analysis of novel cellular microbes from the engineered biome
Retrieve all samples from this project

Metagenome-assembled genome: SRR7515931_bin.142_CONCOCT_v1.1_MAG
Metagenome-assembled genome: SRR7515931_bin.142_CONCOCT_v1.1_MAG

biosample
Metagenome-assembled genome: SRR7515930_bin.19_CONCOCT_v1.1_MAG
Metagenome-assembled genome: SRR7515930_bin.19_CONCOCT_v1.1_MAG

biosample
MAG TPA_asm: uncultured Alphaproteobacteria bacterium isolate SRR1506983_bin.37_...
MAG TPA_asm: uncultured Alphaproteobacteria bacterium isolate SRR1506983_bin.37_CONCOCT_v1.1_MAG, whole genome shotgun sequencing project
gi|2424620554|tpe|CALKYP000000000.1 YP010000000

Nucleotide
MAG TPA_asm: uncultured Flavobacteriales bacterium isolate ERR1995204_bin.122_CO...
MAG TPA_asm: uncultured Flavobacteriales bacterium isolate ERR1995204_bin.122_CONCOCT_v1.1_MAG, whole genome shotgun sequencing project
gi|2423155506|tpe|CALGAQ000000000.1 AQ010000000

Nucleotide
Metagenome-assembled genome: SRR6227243_bin.15_CONCOCT_v1.1_MAG
Metagenome-assembled genome: SRR6227243_bin.15_CONCOCT_v1.1_MAG

biosample

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