Metagenome-assembled genome: SRR7515930_bin.12_CON... - BioSample

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Result Filters

Organism: uncultured Actinomycetes bacterium
cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; environmental samples

Attributes

collection date	2016-02-17
broad-scale environmental context	Engineered
local-scale environmental context	Engineered
environmental medium	Engineered
geographic location	Saudi Arabia
investigation type	metagenome-assembled genome
isolation source	metagenome
project name	This project aims to understand the microbial community and its functional potential of biofouled reverse osmosis membranes used in water purification.
sample name	SRR7515930_bin.12_CONCOCT_v1.1_MAG
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2023-01-03
ENA-LAST-UPDATE	2023-01-03
External Id	SAMEA14082567
INSDC center alias	EBI
INSDC center name	European Bioinformatics Institute
INSDC first public	2023-01-03T00:32:26Z
INSDC last update	2023-01-03T00:32:26Z
INSDC status	public
Submitter Id	SRR7515930_bin.12_CONCOCT_v1.1_MAG
assembly quality	Multiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs
assembly software	metaspadesv3.12.0
binning parameters	Default
binning software	CONCOCT v1.1
broker name	EMG broker account, EMBL-EBI
completeness score	99.15
completeness software	CheckM
contamination score	3.85
geographic location (latitude)	22.299927
geographic location (longitude)	39.116756
metagenomic source	metagenome
sample derived from	SAMN09650985
scientific_name	uncultured actinobacterium
sequencing method	Illumina HiSeq 4000
taxonomic identity marker	multi-marker approach

Description: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR7515930 of study SRP153197.