Metagenome-assembled genome: SRR6853361_bin.20_CON... - BioSample

Warning: The NCBI web site requires JavaScript to function. more...

Result Filters

Organism: uncultured Methylobacterium sp.
cellular organisms; Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales; Methylobacteriaceae; Methylobacterium; environmental samples

Attributes

collection date	2015-03-05
broad-scale environmental context	Engineered
local-scale environmental context	Engineered
environmental medium	Engineered
geographic location	USA
investigation type	metagenome-assembled genome
isolation source	metagenome
project name	Metagenomes created from samples collected from the International Space Station
sample name	SRR6853361_bin.20_CONCOCT_v1.1_MAG
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2023-01-03
ENA-LAST-UPDATE	2023-01-03
External Id	SAMEA14082531
INSDC center alias	EBI
INSDC center name	European Bioinformatics Institute
INSDC first public	2023-01-03T00:32:19Z
INSDC last update	2023-01-03T00:32:19Z
INSDC status	public
Submitter Id	SRR6853361_bin.20_CONCOCT_v1.1_MAG
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	metaspadesv3.13.0
binning parameters	Default
binning software	CONCOCT v1.1
broker name	EMG broker account, EMBL-EBI
completeness score	88.71
completeness software	CheckM
contamination score	1.12
geographic location (latitude)	not provided
geographic location (longitude)	not provided
metagenomic source	metagenome
sample derived from	SAMN05581703
scientific_name	uncultured Methylobacterium sp.
sequencing method	Illumina HiSeq 4000
taxonomic identity marker	multi-marker approach

Description: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR6853361 of study SRP135937.

BioProject: PRJEB51072 Large-scale analysis of novel cellular microbes from the engineered biome
Retrieve all samples from this project

Metagenome-assembled genome: SRR6853361_bin.20_CONCOCT_v1.1_MAG
Metagenome-assembled genome: SRR6853361_bin.20_CONCOCT_v1.1_MAG

biosample
MAG TPA_asm: uncultured Ignavibacteria bacterium isolate SRR5894287_bin.64_CONCO...
MAG TPA_asm: uncultured Ignavibacteria bacterium isolate SRR5894287_bin.64_CONCOCT_v1.1_MAG, whole genome shotgun sequencing project
gi|2425600966|tpe|CALJZJ000000000.1 ZJ010000000

Nucleotide
MAG TPA_asm: uncultured Acidobacteriota bacterium isolate SRR5457059_bin.24_CONC...
MAG TPA_asm: uncultured Acidobacteriota bacterium isolate SRR5457059_bin.24_CONCOCT_v1.1_MAG, whole genome shotgun sequencing project
gi|2425264097|tpe|CALEJU000000000.1 JU010000000

Nucleotide
Metagenome-assembled genome: SRR3901697_bin.39_CONCOCT_v1.1_MAG
Metagenome-assembled genome: SRR3901697_bin.39_CONCOCT_v1.1_MAG

biosample
Metagenome-assembled genome: SRR3901708_bin.37_CONCOCT_v1.1_MAG
Metagenome-assembled genome: SRR3901708_bin.37_CONCOCT_v1.1_MAG

biosample

Your browsing activity is empty.

Activity recording is turned off.

You are here: NCBI > DNA & RNA > BioSample