Metagenome-assembled genome: SRR6713632_bin.123_CO... - BioSample

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Result Filters

Organism: uncultured Firmicutes bacterium
cellular organisms; Bacteria; Bacillati; Bacillota; environmental samples

Attributes

collection date	2015-12-17
broad-scale environmental context	Engineered
local-scale environmental context	Engineered
environmental medium	Engineered
geographic location	China
investigation type	metagenome-assembled genome
isolation source	metagenome
project name	Monitoring the dynamics of ARGs during thermophilic composting
sample name	SRR6713632_bin.123_CONCOCT_v1.1_MAG
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2023-01-03
ENA-LAST-UPDATE	2023-01-03
External Id	SAMEA14082491
INSDC center alias	EBI
INSDC center name	European Bioinformatics Institute
INSDC first public	2023-01-03T00:32:34Z
INSDC last update	2023-01-03T00:32:34Z
INSDC status	public
Submitter Id	SRR6713632_bin.123_CONCOCT_v1.1_MAG
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	metaspadesv3.12.0
binning parameters	Default
binning software	CONCOCT v1.1
broker name	EMG broker account, EMBL-EBI
completeness score	91.0
completeness software	CheckM
contamination score	0.85
geographic location (latitude)	not provided
geographic location (longitude)	not provided
metagenomic source	metagenome
sample derived from	SAMN08517344
scientific_name	uncultured Firmicutes bacterium
sequencing method	HiSeq X Ten
taxonomic identity marker	multi-marker approach

Description: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR6713632 of study SRP132747.

BioProject: PRJEB51072 Large-scale analysis of novel cellular microbes from the engineered biome
Retrieve all samples from this project

Metagenome-assembled genome: SRR6713632_bin.123_CONCOCT_v1.1_MAG
Metagenome-assembled genome: SRR6713632_bin.123_CONCOCT_v1.1_MAG

biosample
MAG TPA_asm: uncultured Acidimicrobiaceae bacterium isolate SRR6231140_bin.42_CO...
MAG TPA_asm: uncultured Acidimicrobiaceae bacterium isolate SRR6231140_bin.42_CONCOCT_v1.1_MAG, whole genome shotgun sequencing project
gi|2423261048|tpe|CALAYR000000000.1 YR010000000

Nucleotide
MAG TPA_asm: uncultured Synergistaceae bacterium isolate SRR3330211_bin.70_CONCO...
MAG TPA_asm: uncultured Synergistaceae bacterium isolate SRR3330211_bin.70_CONCOCT_v1.1_MAG, whole genome shotgun sequencing project
gi|2423157182|tpe|CALGYX000000000.1 YX010000000

Nucleotide
Metagenome-assembled genome: SRR5576004_bin.145_CONCOCT_v1.1_MAG
Metagenome-assembled genome: SRR5576004_bin.145_CONCOCT_v1.1_MAG

biosample

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