Metagenome-assembled genome: SRR6227243_bin.15_CON... - BioSample

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Result Filters

Organism: uncultured Gammaproteobacteria bacterium
cellular organisms; Bacteria; Pseudomonadota; Gammaproteobacteria; environmental samples

Attributes

collection date	2016-05-01
broad-scale environmental context	Engineered
local-scale environmental context	Engineered
environmental medium	Engineered
geographic location	China
investigation type	metagenome-assembled genome
isolation source	metagenome
project name	enrichment culture of tidal flat sediments from Yangtze Estuary
sample name	SRR6227243_bin.15_CONCOCT_v1.1_MAG
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2023-01-03
ENA-LAST-UPDATE	2023-01-03
External Id	SAMEA14082260
INSDC center alias	EBI
INSDC center name	European Bioinformatics Institute
INSDC first public	2023-01-03T00:32:16Z
INSDC last update	2023-01-03T00:32:16Z
INSDC status	public
Submitter Id	SRR6227243_bin.15_CONCOCT_v1.1_MAG
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	metaspadesv3.12.0
binning parameters	Default
binning software	CONCOCT v1.1
broker name	EMG broker account, EMBL-EBI
completeness score	72.34
completeness software	CheckM
contamination score	0.97
geographic location (latitude)	31.3
geographic location (longitude)	121.23
metagenomic source	metagenome
sample derived from	SAMN07837293
scientific_name	uncultured Gammaproteobacteria bacterium
sequencing method	Illumina HiSeq 4000
taxonomic identity marker	multi-marker approach

Description: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR6227243 of study SRP122254.

BioProject: PRJEB51072 Large-scale analysis of novel cellular microbes from the engineered biome
Retrieve all samples from this project

Metagenome-assembled genome: SRR6227243_bin.15_CONCOCT_v1.1_MAG
Metagenome-assembled genome: SRR6227243_bin.15_CONCOCT_v1.1_MAG

biosample
Metagenome-assembled genome: SRR6231170_bin.64_CONCOCT_v1.1_MAG
Metagenome-assembled genome: SRR6231170_bin.64_CONCOCT_v1.1_MAG

biosample
MAG TPA_asm: uncultured Burkholderiales bacterium isolate SRR3997478_bin.12_CONC...
MAG TPA_asm: uncultured Burkholderiales bacterium isolate SRR3997478_bin.12_CONCOCT_v1.1_MAG, whole genome shotgun sequencing project
gi|2425125977|tpe|CALLWL000000000.1 WL010000000

Nucleotide
MAG TPA_asm: uncultured Verrucomicrobiota bacterium isolate SRR4028131_bin.104_C...
MAG TPA_asm: uncultured Verrucomicrobiota bacterium isolate SRR4028131_bin.104_CONCOCT_v1.1_MAG, whole genome shotgun sequencing project
gi|2425613019|tpe|CALAYC000000000.1 YC010000000

Nucleotide
Metagenome-assembled genome: SRR3901701_bin.101_CONCOCT_v1.1_MAG
Metagenome-assembled genome: SRR3901701_bin.101_CONCOCT_v1.1_MAG

biosample

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