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Metagenome-assembled genome: SRR6007445_bin.4_CONCOCT_v1.1_MAG

Identifiers
BioSample: SAMEA14082223; SRA: ERS11685359
Organism
uncultured Rhodocyclales bacterium
cellular organisms; Bacteria; Pseudomonadota; Betaproteobacteria; Rhodocyclales; environmental samples
Attributes
collection date2016-07-01
broad-scale environmental contextEngineered
local-scale environmental contextEngineered
environmental mediumEngineered
geographic locationnot provided
investigation typemetagenome-assembled genome
isolation sourcemetagenome
project namewe examined CIP removal and biodegradation using a sulfate-reducing upflow sludge bed (SRUSB) reactor during long-term operation. The ARGs in SRB sludge samples were also examined based on the high-throughput sequencing technique, to elucidate the possible degradation mechanism of CIP in the SRB sludge system based on the change in ARGs.
sample nameSRR6007445_bin.4_CONCOCT_v1.1_MAG
ENA-CHECKLISTERC000047
ENA-FIRST-PUBLIC2023-01-03
ENA-LAST-UPDATE2023-01-03
External IdSAMEA14082223
INSDC center aliasEBI
INSDC center nameEuropean Bioinformatics Institute
INSDC first public2023-01-03T00:32:31Z
INSDC last update2023-01-03T00:32:31Z
INSDC statuspublic
Submitter IdSRR6007445_bin.4_CONCOCT_v1.1_MAG
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwaremetaspadesv3.12.0
binning parametersDefault
binning softwareCONCOCT v1.1
broker nameEMG broker account, EMBL-EBI
completeness score96.64
completeness softwareCheckM
contamination score2.44
geographic location (latitude)not provided
geographic location (longitude)not provided
metagenomic sourcemetagenome
sample derived fromSAMN07551449
scientific_nameuncultured Rhodocyclales bacterium
sequencing methodIllumina HiSeq 3000
taxonomic identity markermulti-marker approach
Description

This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR6007445 of study SRP116833.

BioProject
PRJEB51072 Large-scale analysis of novel cellular microbes from the engineered biome
Retrieve all samples from this project

Submission
EBI; 2023-01-04
Accession:
SAMEA14082223
ID:
32559519

BioProject Nucleotide

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