Metagenome-assembled genome: SRR5894287_bin.64_CON... - BioSample

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Metagenome-assembled genome: SRR5894287_bin.64_CONCOCT_v1.1_MAG

Identifiers: BioSample: SAMEA14082179; SRA: ERS11685315

Organism: uncultured Ignavibacteria bacterium
cellular organisms; Bacteria; FCB group; Bacteroidota/Chlorobiota group; Ignavibacteriota; Ignavibacteria; environmental samples

Attributes

collection date	2015-01-01
broad-scale environmental context	Engineered
local-scale environmental context	Engineered
environmental medium	Engineered
geographic location	USA
investigation type	metagenome-assembled genome
isolation source	metagenome
project name	Metabolic interactions and genetic exchange are important features of microbial communities. We performed genome-resolved metagenomics to characterize communities performing dissimilatory perchlorate reduction, a metabolism that involves reactive chlorine species and horizontal gene transfer of a conserved functional gene cluster. Distinct communities from source marine sediment and enrichments of varying salinity were recovered, and enriched populations included perchlorate-reducing bacteria as well as putative interacting populations of chlorate-reducing, sulfur-reducing, and fermentative microorganisms. Vectors for perchlorate reduction genes and a novel gene cluster involved in perchlorate reduction were also identified.
sample name	SRR5894287_bin.64_CONCOCT_v1.1_MAG
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2023-01-03
ENA-LAST-UPDATE	2023-01-03
External Id	SAMEA14082179
INSDC center alias	EBI
INSDC center name	European Bioinformatics Institute
INSDC first public	2023-01-03T00:32:19Z
INSDC last update	2023-01-03T00:32:19Z
INSDC status	public
Submitter Id	SRR5894287_bin.64_CONCOCT_v1.1_MAG
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	metaspadesv3.12.0
binning parameters	Default
binning software	CONCOCT v1.1
broker name	EMG broker account, EMBL-EBI
completeness score	93.99
completeness software	CheckM
contamination score	5.37
geographic location (latitude)	37.8629
geographic location (longitude)	-122.3132
metagenomic source	metagenome
sample derived from	SAMN07138185
scientific_name	uncultured Ignavibacteria bacterium
sequencing method	Illumina HiSeq 2000
taxonomic identity marker	multi-marker approach

Description: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR5894287 of study SRP114798.