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Metagenome-assembled genome: SRR5576005_bin.162_CONCOCT_v1.1_MAG

Identifiers
BioSample: SAMEA14082162; SRA: ERS11685298
Organism
Flavobacterium filum
cellular organisms; Bacteria; FCB group; Bacteroidota/Chlorobiota group; Bacteroidota; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium
Attributes
collection date2015-09-17
broad-scale environmental contextEngineered
local-scale environmental contextEngineered
environmental mediumEngineered
geographic locationUSA
investigation typemetagenome-assembled genome
isolation sourcemetagenome
project nameThis project focus on a Denitrifying Candidatus Accumulibacter enrichment culture that we’ve shown to be capable of producing substantial nitrous oxide when nitrite is present as the electron acceptor for denitrification. Shotgun metagenomic sequencing and genome-resolved metagenome analysis were applied to investigate the genomic nitrogen transformation potential for two Accumulibacter genomes as well as flanking bacterial genomes.
sample nameSRR5576005_bin.162_CONCOCT_v1.1_MAG
ENA-CHECKLISTERC000047
ENA-FIRST-PUBLIC2023-01-03
ENA-LAST-UPDATE2023-01-03
External IdSAMEA14082162
INSDC center aliasEBI
INSDC center nameEuropean Bioinformatics Institute
INSDC first public2023-01-03T00:32:39Z
INSDC last update2023-01-03T00:32:39Z
INSDC statuspublic
Submitter IdSRR5576005_bin.162_CONCOCT_v1.1_MAG
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwaremetaspadesv3.12.0
binning parametersDefault
binning softwareCONCOCT v1.1
broker nameEMG broker account, EMBL-EBI
completeness score95.64
completeness softwareCheckM
contamination score3.63
geographic location (latitude)42.06
geographic location (longitude)-87.68
metagenomic sourcemetagenome
sample derived fromSAMN06957054
scientific_nameFlavobacterium filum
sequencing methodIllumina HiSeq 4000
taxonomic identity markermulti-marker approach
Description

This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR5576005 of study SRP107338.

BioProject
PRJEB51072 Large-scale analysis of novel cellular microbes from the engineered biome
Retrieve all samples from this project

Submission
EBI; 2023-01-04
Accession:
SAMEA14082162
ID:
32559458

BioProject Nucleotide

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