Metagenome-assembled genome: SRR5576003_bin.1_CONC... - BioSample

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Metagenome-assembled genome: SRR5576003_bin.1_CONCOCT_v1.1_MAG

Identifiers: BioSample: SAMEA14082126; SRA: ERS11685262

Organism: uncultured Alphaproteobacteria bacterium
cellular organisms; Bacteria; Pseudomonadota; Alphaproteobacteria; environmental samples

Attributes

collection date	2015-05-19
broad-scale environmental context	Engineered
local-scale environmental context	Engineered
environmental medium	Engineered
geographic location	USA
investigation type	metagenome-assembled genome
isolation source	metagenome
project name	This project focus on a Denitrifying Candidatus Accumulibacter enrichment culture that we’ve shown to be capable of producing substantial nitrous oxide when nitrite is present as the electron acceptor for denitrification. Shotgun metagenomic sequencing and genome-resolved metagenome analysis were applied to investigate the genomic nitrogen transformation potential for two Accumulibacter genomes as well as flanking bacterial genomes.
sample name	SRR5576003_bin.1_CONCOCT_v1.1_MAG
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2023-01-03
ENA-LAST-UPDATE	2023-01-03
External Id	SAMEA14082126
INSDC center alias	EBI
INSDC center name	European Bioinformatics Institute
INSDC first public	2023-01-03T00:32:29Z
INSDC last update	2023-01-03T00:32:29Z
INSDC status	public
Submitter Id	SRR5576003_bin.1_CONCOCT_v1.1_MAG
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	metaspadesv3.12.0
binning parameters	Default
binning software	CONCOCT v1.1
broker name	EMG broker account, EMBL-EBI
completeness score	91.88
completeness software	CheckM
contamination score	8.14
geographic location (latitude)	42.06
geographic location (longitude)	-87.68
metagenomic source	metagenome
sample derived from	SAMN06957052
scientific_name	uncultured Alphaproteobacteria bacterium
sequencing method	Illumina HiSeq 4000
taxonomic identity marker	multi-marker approach

Description: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR5576003 of study SRP107338.