Metagenome-assembled genome: SRR5251193_bin.98_CON... - BioSample

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Result Filters

Organism: uncultured Roseiflexaceae bacterium
cellular organisms; Bacteria; Bacillati; Chloroflexota; Chloroflexia; Chloroflexales; Roseiflexineae; Roseiflexaceae; environmental samples

Attributes

collection date	2013-01-20
broad-scale environmental context	Engineered
local-scale environmental context	Engineered
environmental medium	Engineered
geographic location	USA
investigation type	metagenome-assembled genome
isolation source	metagenome
project name	Ionic liquid and high solid enriched microbial communities from the Joint BioEnergy Institute, USA - AR20-2-D metagenome
sample name	SRR5251193_bin.98_CONCOCT_v1.1_MAG
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2023-01-03
ENA-LAST-UPDATE	2023-01-03
External Id	SAMEA14082083
INSDC center alias	EBI
INSDC center name	European Bioinformatics Institute
INSDC first public	2023-01-03T00:32:19Z
INSDC last update	2023-01-03T00:32:19Z
INSDC status	public
Submitter Id	SRR5251193_bin.98_CONCOCT_v1.1_MAG
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	metaspadesv3.12.0
binning parameters	Default
binning software	CONCOCT v1.1
broker name	EMG broker account, EMBL-EBI
completeness score	93.5
completeness software	CheckM
contamination score	3.96
geographic location (latitude)	38.5402
geographic location (longitude)	-121.75
metagenomic source	metagenome
sample derived from	SAMN06268253
scientific_name	uncultured Roseiflexaceae bacterium
sequencing method	Illumina HiSeq 2500
taxonomic identity marker	multi-marker approach

Description: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR5251193 of study SRP099459.

BioProject: PRJEB51072 Large-scale analysis of novel cellular microbes from the engineered biome
Retrieve all samples from this project

Metagenome-assembled genome: SRR5251193_bin.98_CONCOCT_v1.1_MAG
Metagenome-assembled genome: SRR5251193_bin.98_CONCOCT_v1.1_MAG

biosample
Metagenome-assembled genome: SRR6007445_bin.51_CONCOCT_v1.1_MAG
Metagenome-assembled genome: SRR6007445_bin.51_CONCOCT_v1.1_MAG

biosample
MAG TPA_asm: uncultured Planctomycetia bacterium isolate SRR6227243_bin.141_CONC...
MAG TPA_asm: uncultured Planctomycetia bacterium isolate SRR6227243_bin.141_CONCOCT_v1.1_MAG, whole genome shotgun sequencing project
gi|2426522543|tpe|CALFYL000000000.1 YL010000000

Nucleotide
MAG TPA_asm: uncultured Anaerolineaceae bacterium isolate SRR1506984_bin.151_CON...
MAG TPA_asm: uncultured Anaerolineaceae bacterium isolate SRR1506984_bin.151_CONCOCT_v1.1_MAG, whole genome shotgun sequencing project
gi|2426276486|tpe|CALJLJ000000000.1 LJ010000000

Nucleotide
MAG TPA_asm: uncultured Planctomycetales bacterium isolate SRR1955887_bin.73_CON...
MAG TPA_asm: uncultured Planctomycetales bacterium isolate SRR1955887_bin.73_CONCOCT_v1.1_MAG, whole genome shotgun sequencing project
gi|2426511939|tpe|CALKTZ000000000.1 TZ010000000

Nucleotide

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