Metagenome-assembled genome: SRR5007349_bin.35_CON... - BioSample

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Result Filters

Organism: uncultured Methanosarcina sp.
cellular organisms; Archaea; Methanobacteriati; Methanobacteriota; Stenosarchaea group; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina; environmental samples

Attributes

collection date	2015-02-18
broad-scale environmental context	Engineered
local-scale environmental context	Engineered
environmental medium	Engineered
geographic location	USA
investigation type	metagenome-assembled genome
isolation source	metagenome
project name	Metagenomics of anaerobic wastewater microbial communities to study anthropogenic carbon cycling
sample name	SRR5007349_bin.35_CONCOCT_v1.1_MAG
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2023-01-03
ENA-LAST-UPDATE	2023-01-03
External Id	SAMEA14082044
INSDC center alias	EBI
INSDC center name	European Bioinformatics Institute
INSDC first public	2023-01-03T00:32:36Z
INSDC last update	2023-01-03T00:32:36Z
INSDC status	public
Submitter Id	SRR5007349_bin.35_CONCOCT_v1.1_MAG
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	metaspadesv3.12.0
binning parameters	Default
binning software	CONCOCT v1.1
broker name	EMG broker account, EMBL-EBI
completeness score	99.84
completeness software	CheckM
contamination score	0.65
geographic location (latitude)	37.8
geographic location (longitude)	-122.27
metagenomic source	metagenome
sample derived from	SAMN05720282
scientific_name	uncultured Methanosarcina sp.
sequencing method	Illumina HiSeq 2500
taxonomic identity marker	multi-marker approach

Description: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR5007349 of study SRP093101.

BioProject: PRJEB51072 Large-scale analysis of novel cellular microbes from the engineered biome
Retrieve all samples from this project

Metagenome-assembled genome: SRR5007349_bin.35_CONCOCT_v1.1_MAG
Metagenome-assembled genome: SRR5007349_bin.35_CONCOCT_v1.1_MAG

biosample
MAG TPA_asm: Klebsiella quasipneumoniae isolate SRR6853359_bin.23_CONCOCT_v1.1_M...
MAG TPA_asm: Klebsiella quasipneumoniae isolate SRR6853359_bin.23_CONCOCT_v1.1_MAG, whole genome shotgun sequencing project
gi|2426200923|tpe|CALFYI000000000.1 YI010000000

Nucleotide
MAG TPA_asm: uncultured Thiobacillus sp. isolate SRR3901695_bin.40_CONCOCT_v1.1_...
MAG TPA_asm: uncultured Thiobacillus sp. isolate SRR3901695_bin.40_CONCOCT_v1.1_MAG, whole genome shotgun sequencing project
gi|2424958145|tpe|CALDGJ000000000.1 GJ010000000

Nucleotide
Metagenome-assembled genome: SRR7515931_bin.69_CONCOCT_v1.1_MAG
Metagenome-assembled genome: SRR7515931_bin.69_CONCOCT_v1.1_MAG

biosample
Metagenome-assembled genome: SRR6231185_bin.77_CONCOCT_v1.1_MAG
Metagenome-assembled genome: SRR6231185_bin.77_CONCOCT_v1.1_MAG

biosample

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