Metagenome-assembled genome: SRR4028141_bin.101_CO... - BioSample

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Result Filters

Organism: uncultured Alkalilimnicola sp.
cellular organisms; Bacteria; Pseudomonadota; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Alkalilimnicola; environmental samples

Attributes

collection date	2010-11-01
broad-scale environmental context	Engineered
local-scale environmental context	Engineered
environmental medium	Engineered
geographic location	USA
investigation type	metagenome-assembled genome
isolation source	metagenome
project name	Thermophilic microbial communities from the Joint Bioenergy Institute, California, USA of rice/straw/compost enrichment - eDNA_2 metagenome
sample name	SRR4028141_bin.101_CONCOCT_v1.1_MAG
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2023-01-03
ENA-LAST-UPDATE	2023-01-03
External Id	SAMEA14082021
INSDC center alias	EBI
INSDC center name	European Bioinformatics Institute
INSDC first public	2023-01-03T00:32:29Z
INSDC last update	2023-01-03T00:32:29Z
INSDC status	public
Submitter Id	SRR4028141_bin.101_CONCOCT_v1.1_MAG
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	spadesv3.11.1
binning parameters	Default
binning software	CONCOCT v1.1
broker name	EMG broker account, EMBL-EBI
completeness score	97.25
completeness software	CheckM
contamination score	3.73
geographic location (latitude)	38.54027
geographic location (longitude)	-121.75008
metagenomic source	metagenome
sample derived from	SAMN05518450
scientific_name	uncultured Alkalilimnicola sp.
sequencing method	Illumina HiSeq 2000
taxonomic identity marker	multi-marker approach

Description: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR4028141 of study SRP081806.