Metagenome-assembled genome: SRR789046_bin.50_CONC... - BioSample

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Metagenome-assembled genome: SRR789046_bin.50_CONCOCT_v1.1_MAG

Identifiers: BioSample: SAMEA14076154; SRA: ERS11679382

Organism: Megamonas hypermegale
cellular organisms; Bacteria; Bacillati; Bacillota; Negativicutes; Selenomonadales; Selenomonadaceae; Megamonas

Attributes

collection date	2010-09-07
broad-scale environmental context	Mixed
local-scale environmental context	Mixed
environmental medium	Mixed
geographic location	United Kingdom
investigation type	metagenome-assembled genome
isolation source	metagenome
project name	Chickens are major source of food and protein worldwide. Feed conversion and the health of chickens relies on the largely unexplored complex microbial community that inhabits the chicken gut, particularly the ceca. Therefore a studly goal was to use in-depth metagenomics of the ceca to examine the microbial community from the ceca of a Broiler Chicken.
sample name	SRR789046_bin.50_CONCOCT_v1.1_MAG
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2023-01-03
ENA-LAST-UPDATE	2023-01-03
External Id	SAMEA14076154
INSDC center alias	EBI
INSDC center name	European Bioinformatics Institute
INSDC first public	2023-01-03T00:32:53Z
INSDC last update	2023-01-03T00:32:53Z
INSDC status	public
Submitter Id	SRR789046_bin.50_CONCOCT_v1.1_MAG
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	metaSPAdes v3.14.1
binning parameters	Default
binning software	CONCOCT v1.1
broker name	EMG broker account, EMBL-EBI
completeness score	99.68
completeness software	CheckM
contamination score	1.27
geographic location (latitude)	50.9047
geographic location (longitude)	-3.5233
metagenomic source	metagenome
sample derived from	SAMN01983846
scientific_name	Megamonas hypermegale
sequencing method	Illumina HiSeq 2000
taxonomic identity marker	multi-marker approach

Description: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR789046 of study SRP019776.