Metagenome-assembled genome: SRR5438753_bin.16_CON... - BioSample

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Result Filters

Organism: Streptococcus pneumoniae
cellular organisms; Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus

Attributes

collection date	2017-01-30
broad-scale environmental context	Engineered
local-scale environmental context	Food production
environmental medium	Food production
geographic location	China
investigation type	metagenome-assembled genome
isolation source	food production metagenome
project name	The theoretical basis for the industrial production of Kombucha
sample name	SRR5438753_bin.16_CONCOCT_v1.1_MAG
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2023-01-03
ENA-LAST-UPDATE	2023-01-03
External Id	SAMEA14037548
INSDC center alias	EBI
INSDC center name	European Bioinformatics Institute
INSDC first public	2023-01-03T00:32:16Z
INSDC last update	2023-01-03T00:32:16Z
INSDC status	public
Submitter Id	SRR5438753_bin.16_CONCOCT_v1.1_MAG
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	spadesv3.11.1
binning parameters	Default
binning software	CONCOCT v1.1
broker name	EMG broker account, EMBL-EBI
completeness score	89.42
completeness software	CheckM
contamination score	1.93
geographic location (latitude)	45.75
geographic location (longitude)	126.62
metagenomic source	food production metagenome
sample derived from	SAMN06711160
scientific_name	Streptococcus pneumoniae
sequencing method	HiSeq X Ten
taxonomic identity marker	multi-marker approach

Description: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR5438753 of study SRP103682.