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Metagenome-assembled genome: SRR1561993_bin.1_CONCOCT_v1.1_MAG

Identifiers
BioSample: SAMEA14037331; SRA: ERS11640612
Organism
Sphingobacterium alimentarium
cellular organisms; Bacteria; FCB group; Bacteroidota/Chlorobiota group; Bacteroidota; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium
Attributes
collection date2013-04-21
broad-scale environmental contextEngineered
local-scale environmental contextFood production
environmental mediumFood production
geographic locationChina
investigation typemetagenome-assembled genome
isolation sourcefood production metagenome
project nameChinese liquor is produced by a solid-state fermentation process used for hundreds of years. The process is carried out in rectangular soil pits, whose walls have been layered with a fermentation mud. The age of these this layer is believed to influence final liquor quality and the microbes resident here form the inoculum for fermentation. Microbial diversity in these layers is poorly understood. This is the first report which describes a deep metagenomic sequencing based study to reveal the microbial diversity from 24 pits of varying ages, 20, 30, 50, 140, 220, 350, 400 and 440 years.
sample nameSRR1561993_bin.1_CONCOCT_v1.1_MAG
ENA-CHECKLISTERC000047
ENA-FIRST-PUBLIC2023-01-03
ENA-LAST-UPDATE2023-01-03
External IdSAMEA14037331
INSDC center aliasEBI
INSDC center nameEuropean Bioinformatics Institute
INSDC first public2023-01-03T00:32:13Z
INSDC last update2023-01-03T00:32:13Z
INSDC statuspublic
Submitter IdSRR1561993_bin.1_CONCOCT_v1.1_MAG
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwaremetaspadesv3.12.0
binning parametersDefault
binning softwareCONCOCT v1.1
broker nameEMG broker account, EMBL-EBI
completeness score63.26
completeness softwareCheckM
contamination score1.9
geographic location (latitude)28.88
geographic location (longitude)105.45
metagenomic sourcefood production metagenome
sample derived fromSAMN03018316
scientific_nameSphingobacterium alimentarium
sequencing methodIllumina HiSeq 2000
taxonomic identity markermulti-marker approach
Description

This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR1561993 of study SRP046072.

BioProject
PRJEB51073 Large-scale analysis of novel cellular microbes from the food production biome
Retrieve all samples from this project

Submission
EBI; 2023-01-04
Accession:
SAMEA14037331
ID:
32556274

BioProject Nucleotide

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