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Metagenome-assembled genome: SRR1793861_binner23_Refined_22

Identifiers
BioSample: SAMEA115288975; Sample name: SRR1793861_binner23_Refined_22; SRA: ERS18258232
Organism
uncultured bacterium
cellular organisms; Bacteria; environmental samples
Attributes
broad-scale environmental contextaqua
collection date2011-05-20
environmental mediumamazon
investigation typemetagenome-assembled genome
project nameThis project focuses on the Amazon River-to-tropical Atlantic Ocean continuum because of both its immense scale and its apparent sensitivity to climate variability and anthropogenic forcing. The river’s effect on the ocean depends not only on the river hydrology, but what the river carries and how those components are modified during transit from their terrestrial or aquatic origins. We brought together limnologists and oceanographers in an integrated project to improve our understanding of carbon exchange between the atmosphere and this tropical river continuum, focusing on the lower reach, nearshore, and offshore tropical Atlantic, with the goal of improving predictive capabilities under differing climate change scenarios.
geographic locationBrazil
isolation sourceaquatic metagenome
assembly softwarespades_v3.11.1
binning softwareMGnify-genomes-generation-pipeline_v1.0.0
organismuncultured bacterium
assembly qualityMultiple fragments where gaps span repetitive regions. Presence of the 23S, 16S, and 5S rRNA genes and at least 18 tRNAs
sample derived fromSAMN03252819
geographic location (longitude)-55.0075 DD
taxonomic identity markermulti-marker approach
binning parametersdefault
completeness score91.2 %
contamination score1.41 %
geographic location (latitude)-2.484383 DD
scientific_nameuncultured bacterium
local environmental contextwater
metagenomic sourceaquatic metagenome
sequencing methodIllumina HiSeq 2500
completeness softwareCheckM2_v1.0.1
Description

This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR1793861 of study SRP039390.

BioProject
PRJEB46727
Retrieve all samples from this project

Submission
EBI; 2024-03-08
Accession:
SAMEA115288975
ID:
40324481

BioProject Nucleotide

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