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Metagenome-assembled genome: SRR1185413_concoct_48

Identifiers
BioSample: SAMEA115288961; Sample name: SRR1185413_concoct_48; SRA: ERS18258218
Organism
uncultured Rhodobacterales bacterium
cellular organisms; Bacteria; Pseudomonadota; Alphaproteobacteria; Rhodobacterales; environmental samples
Attributes
broad-scale environmental contextaqua
collection date2010-05-26
environmental mediumamazon
investigation typemetagenome-assembled genome
project nameThis project focuses on the Amazon River-to-tropical Atlantic Ocean continuum because of both its immense scale and its apparent sensitivity to climate variability and anthropogenic forcing. The river’s effect on the ocean depends not only on the river hydrology, but what the river carries and how those components are modified during transit from their terrestrial or aquatic origins. We brought together limnologists and oceanographers in an integrated project to improve our understanding of carbon exchange between the atmosphere and this tropical river continuum, focusing on the lower reach, nearshore, and offshore tropical Atlantic, with the goal of improving predictive capabilities under differing climate change scenarios.
geographic locationAtlantic Ocean
isolation sourceaquatic metagenome
assembly softwarespades_v3.11.1
binning softwareMGnify-genomes-generation-pipeline_v1.0.0
organismuncultured Rhodobacterales bacterium
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
sample derived fromSAMN02628402
geographic location (longitude)-53.0 DD
taxonomic identity markermulti-marker approach
binning parametersdefault
completeness score67.86 %
contamination score2.2 %
geographic location (latitude)7.29 DD
scientific_nameuncultured Rhodobacterales bacterium
local environmental contextwater
metagenomic sourceaquatic metagenome
sequencing methodIllumina Genome Analyzer IIx
completeness softwareCheckM2_v1.0.1
Description

This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR1185413 of study SRP039390.

BioProject
PRJEB46727
Retrieve all samples from this project

Submission
EBI; 2024-03-08
Accession:
SAMEA115288961
ID:
40321681

BioProject Nucleotide

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