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Metagenome-assembled genome: SRR1205250_binner12_Refined_13

Identifiers
BioSample: SAMEA115288960; Sample name: SRR1205250_binner12_Refined_13; SRA: ERS18258217
Organism
uncultured Synechococcus sp.
cellular organisms; Bacteria; Bacillati; Cyanobacteriota/Melainabacteria group; Cyanobacteriota; Cyanophyceae; Synechococcales; Synechococcaceae; Synechococcus; environmental samples
Attributes
broad-scale environmental contextaqua
collection date2010-06-05
environmental mediumamazon
investigation typemetagenome-assembled genome
project nameThis project focuses on the Amazon River-to-tropical Atlantic Ocean continuum because of both its immense scale and its apparent sensitivity to climate variability and anthropogenic forcing. The river’s effect on the ocean depends not only on the river hydrology, but what the river carries and how those components are modified during transit from their terrestrial or aquatic origins. We brought together limnologists and oceanographers in an integrated project to improve our understanding of carbon exchange between the atmosphere and this tropical river continuum, focusing on the lower reach, nearshore, and offshore tropical Atlantic, with the goal of improving predictive capabilities under differing climate change scenarios.
geographic locationAtlantic Ocean
isolation sourceaquatic metagenome
assembly softwarespades_v3.11.1
binning softwareMGnify-genomes-generation-pipeline_v1.0.0
organismuncultured Synechococcus sp.
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
sample derived fromSAMN02628411
geographic location (longitude)-51.36 DD
taxonomic identity markermulti-marker approach
binning parametersdefault
completeness score99.28 %
contamination score1.7 %
geographic location (latitude)4.88 DD
scientific_nameuncultured Synechococcus sp.
local environmental contextwater
metagenomic sourceaquatic metagenome
sequencing methodIllumina Genome Analyzer IIx
completeness softwareCheckM2_v1.0.1
Description

This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR1205250 of study SRP039390.

BioProject
PRJEB46727
Retrieve all samples from this project

Submission
EBI; 2024-03-08
Accession:
SAMEA115288960
ID:
40325293

BioProject Nucleotide

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