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Metagenome-assembled genome: SRR4831644_concoct_31

Identifiers
BioSample: SAMEA115288951; Sample name: SRR4831644_concoct_31; SRA: ERS18258207
Organism
uncultured Oceanospirillaceae bacterium
cellular organisms; Bacteria; Pseudomonadota; Gammaproteobacteria; Oceanospirillales; Oceanospirillaceae; environmental samples
Attributes
broad-scale environmental contextaqua
collection date2012-07-18
environmental mediumamazon
investigation typemetagenome-assembled genome
project nameThis project focuses on the Amazon River-to-tropical Atlantic Ocean continuum because of both its immense scale and its apparent sensitivity to climate variability and anthropogenic forcing. The river’s effect on the ocean depends not only on the river hydrology, but what the river carries and how those components are modified during transit from their terrestrial or aquatic origins. We brought together limnologists and oceanographers in an integrated project to improve our understanding of carbon exchange between the atmosphere and this tropical river continuum, focusing on the lower reach, nearshore, and offshore tropical Atlantic, with the goal of improving predictive capabilities under differing climate change scenarios.
geographic locationAtlantic Ocean
isolation sourceaquatic metagenome
assembly softwarespades_v3.11.1
binning softwareMGnify-genomes-generation-pipeline_v1.0.0
organismuncultured Oceanospirillaceae bacterium
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
sample derived fromSAMN05944602
geographic location (longitude)-51.398 DD
taxonomic identity markermulti-marker approach
binning parametersdefault
completeness score98.0 %
contamination score0.25 %
geographic location (latitude)6.374 DD
scientific_nameuncultured Oceanospirillaceae bacterium
local environmental contextwater
metagenomic sourceaquatic metagenome
sequencing methodIllumina HiSeq 2500
completeness softwareCheckM2_v1.0.1
Description

This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR4831644 of study SRP039390.

BioProject
PRJEB46727
Retrieve all samples from this project

Submission
EBI; 2024-03-08
Accession:
SAMEA115288951
ID:
40321824

BioProject Nucleotide

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