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Metagenome-assembled genome: SRR1787940_binner13_Refined_30

Identifiers
BioSample: SAMEA115288923; Sample name: SRR1787940_binner13_Refined_30; SRA: ERS18258178
Organism
Moraxella osloensis
cellular organisms; Bacteria; Pseudomonadota; Gammaproteobacteria; Moraxellales; Moraxellaceae; Moraxella
Attributes
broad-scale environmental contextaqua
collection date2011-05-08
environmental mediumamazon
investigation typemetagenome-assembled genome
project nameThis project focuses on the Amazon River-to-tropical Atlantic Ocean continuum because of both its immense scale and its apparent sensitivity to climate variability and anthropogenic forcing. The river’s effect on the ocean depends not only on the river hydrology, but what the river carries and how those components are modified during transit from their terrestrial or aquatic origins. We brought together limnologists and oceanographers in an integrated project to improve our understanding of carbon exchange between the atmosphere and this tropical river continuum, focusing on the lower reach, nearshore, and offshore tropical Atlantic, with the goal of improving predictive capabilities under differing climate change scenarios.
geographic locationBrazil
isolation sourceaquatic metagenome
assembly softwarespades_v3.11.1
binning softwareMGnify-genomes-generation-pipeline_v1.0.0
organismMoraxella osloensis
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
sample derived fromSAMN03252805
geographic location (longitude)-50.62255 DD
taxonomic identity markermulti-marker approach
binning parametersdefault
completeness score66.21 %
contamination score0.41 %
geographic location (latitude)-0.156917 DD
scientific_nameMoraxella osloensis
local environmental contextwater
metagenomic sourceaquatic metagenome
sequencing methodIllumina HiSeq 2500
completeness softwareCheckM2_v1.0.1
Description

This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR1787940 of study SRP039390.

BioProject
PRJEB46727
Retrieve all samples from this project

Submission
EBI; 2024-03-08
Accession:
SAMEA115288923
ID:
40326384

BioProject Nucleotide

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