6732_HOM_VAC_contig_38_metaflye_large MAG

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Result Filters

Organism: uncultured Porphyromonadaceae bacterium
cellular organisms; Bacteria; FCB group; Bacteroidota/Chlorobiota group; Bacteroidota; Bacteroidia; Bacteroidales; Porphyromonadaceae; environmental samples

Attributes

broad-scale environmental context	Gallus gallus
collection date	2021-09-15
environmental medium	Caecal contents
geographic location	United Kingdom
isolation source	Caecal contents from a chicken (Gallus gallus)
project name	Metagenomic characterisation of the caecal microbiota of XCR1 knockout chickens
sample name	6732_HOM_VAC_contig_38_metaflye_large MAG
ENA first public	2024-05-09
ENA-CHECKLIST	ERC000011
External Id	SAMEA115146095
INSDC center name	The Roslin Institute (University of Edinburgh)
INSDC last update	2024-01-26T11:57:47Z
INSDC status	public
Submitter Id	6732_HOM_VAC_contig_38_metaflye_large MAG
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	metaFlye
binning parameters	Not applicable
binning software	Not applicable
completeness score	99.98
completeness software	CheckM2
contamination score	0.02
geographic location (latitude)	55.86
geographic location (longitude)	-3.2
local environmental context	Gastrointestinal tract microbiota
metagenomic source	chicken gut metagenome
sample derived from	ERS16138940
scientific_name	uncultured Porphyromonadaceae bacterium
taxonomic identity marker	GTDB-Tk

Description: This sample represents a metagenome assembled genome from the metagenomic sample ERS16138940

BioProject: PRJEB64517 Metagenomic characterisation of the caecal microbiota of XCR1 wild-type and knockout chickens, with and without infectious bronchitis virus vaccination
Retrieve all samples from this project

6732_HOM_VAC_contig_38_metaflye_large MAG
6732_HOM_VAC_contig_38_metaflye_large MAG

biosample
MAG: uncultured Clostridia bacterium isolate metabat2_XCR1_HET_6748_bwa.120 MAG,...
MAG: uncultured Clostridia bacterium isolate metabat2_XCR1_HET_6748_bwa.120 MAG, whole genome shotgun sequencing project
gi|2728597900|emb|CAWVEM000000000.1 EM010000000

Nucleotide
MAG: Candidatus Blautia faecavium isolate metabat2_coassembly_bwa.136 MAG, whole...
MAG: Candidatus Blautia faecavium isolate metabat2_coassembly_bwa.136 MAG, whole genome shotgun sequencing project
gi|2728636979|emb|CAWVIP000000000.1 IP010000000

Nucleotide
MAG: Candidatus Mediterraneibacter faecipullorum isolate metabat2_XCR1_HET_6747_...
MAG: Candidatus Mediterraneibacter faecipullorum isolate metabat2_XCR1_HET_6747_bwa.72 MAG, whole genome shotgun sequencing project
gi|2728617818|emb|CAWVFB000000000.1 FB010000000

Nucleotide
MAG: Candidatus Fusicatenibacter intestinigallinarum isolate metabat2_XCR1_HOM_6...
MAG: Candidatus Fusicatenibacter intestinigallinarum isolate metabat2_XCR1_HOM_6756_bwa.42 MAG, whole genome shotgun sequencing project
gi|2728632518|emb|CAWUZO000000000.1 ZO010000000

Nucleotide

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