Metagenome-assembled genome: SRR1522973_concoct_19... - BioSample

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Result Filters

Identifiers: BioSample: SAMEA115107668; Sample name: SRR1522973_concoct_192_1705335409; SRA: ERS17743385

Organism: uncultured Methylococcaceae bacterium
cellular organisms; Bacteria; Pseudomonadota; Gammaproteobacteria; Methylococcales; Methylococcaceae; environmental samples

Attributes

broad-scale environmental context	water
collection date	2008-09
geographic location	Brazil
environmental medium	amazon
investigation type	metagenome-assembled genome
project name	Illumina HiSeq 2500 sequencing: Metagenomic analysis from lakes in Amazon river
isolation source	freshwater metagenome
assembly software	MetaSPades_v3.14.1
sample derived from	SAMN02924045
geographic location (longitude)	-36.75 DD
binning parameters	default
contamination score	0.42 %
ENA-FIRST-PUBLIC	2024-01-15T16:34:32Z
ENA-LAST-UPDATE	2024-01-15T16:34:32Z
completeness software	CheckM2_v1.0.1
binning software	MGnify-genomes-generation-pipeline_v1.0.0
organism	uncultured Methylococcaceae bacterium
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
taxonomic identity marker	multi-marker approach
completeness score	89.29 %
geographic location (latitude)	-11.83 DD
scientific_name	uncultured Methylococcaceae bacterium
local environmental context	river
metagenomic source	freshwater metagenome
sequencing method	Illumina HiSeq 2500
ENA-FIRST-PUBLIC	2024-01-15
ENA-LAST-UPDATE	2024-01-15

Description: This sample represents a Metagenome-assembled genome assembled from the metagenomic run SRR1522973 of study SRP044326.

Metagenome-assembled genome: SRR1522973_concoct_192_1705335409
Metagenome-assembled genome: SRR1522973_concoct_192_1705335409

biosample
Metagenome-assembled genome: SRR1522971_concoct_105_1705335397
Metagenome-assembled genome: SRR1522971_concoct_105_1705335397

biosample
MAG: uncultured Acidimicrobiales bacterium isolate SRR1522971_concoct_56_1705335...
MAG: uncultured Acidimicrobiales bacterium isolate SRR1522971_concoct_56_1705335396, whole genome shotgun sequencing project
gi|2649365261|emb|CAWUMT000000000.1 MT010000000

Nucleotide
MAG: uncultured Verrucomicrobiales bacterium isolate SRR1522971_concoct_94_17053...
MAG: uncultured Verrucomicrobiales bacterium isolate SRR1522971_concoct_94_1705335414, whole genome shotgun sequencing project
gi|2649389644|emb|CAWUOI000000000.1 OI010000000

Nucleotide
MAG: uncultured bacterium isolate SRR1522973_binner123_12_1705335404, whole geno...
MAG: uncultured bacterium isolate SRR1522973_binner123_12_1705335404, whole genome shotgun sequencing project
gi|2649390062|emb|CAWUNE000000000.1 NE010000000

Nucleotide

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