U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Canada Basin MAG CB11b_AW.45

Identifiers
BioSample: SAMEA114237828; SRA: ERS16223279
Organism
Candidatus Thalassarchaeaceae archaeon
cellular organisms; Archaea; Candidatus Thermoplasmatota; Candidatus Poseidoniia; Candidatus Poseidoniales; Candidatus Thalassarchaeaceae; unclassified Candidatus Thalassarchaeaceae
Attributes
broad-scale environmental contextmarine biome (ENVO:00000447)
collection date2017-09-17
environmental mediumsea water (ENVO:00002149 )
geographic locationArctic Ocean
isolation sourceMAG reconstructed from a metagenome collected in the Canada Basin (Arctic Ocean) at depth of 1000m
project nameBeaufort Gyre Obsering System and Joint Ocean and Ice Studies
sample nameCB11b_AW.45
ENA-CHECKLISTERC000047
ENA-FIRST-PUBLIC2023-10-27T20:28:51Z
ENA-LAST-UPDATE2023-10-27T20:28:51Z
External IdSAMEA114237828
INSDC center nameConcordia University
INSDC first public2023-10-27T20:28:51Z
INSDC last update2023-10-27T20:28:51Z
INSDC statuspublic
Submitter IdCB11b_AW.45
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwareSpades;3.12.0;kmer set 33, 55, 77, 99,127, default parameters otherwise
binning parametersDefault parameters; minimum scaffold length 2500 bp
binning softwareMetabat2 v.2.12.1
completeness score86.4
completeness softwareCheckM v.1.0.7
contamination score2
geographic location (latitude)79.9957
geographic location (longitude)149.9767
local environmental context1000m depth (ENVO:XXXXXXXX)
metagenomic sourceaquatic metagenome
sample derived fromERS15586164
scientific_nameCandidatus Thalassarchaeaceae archaeon
taxonomic identity markerMulti-marker approach
Description

Uncultivated Poseidoniia bacterium UBA8886 recovered from ERS15586164

BioProject
PRJEB57575 Microbiomes of the Canada Basin, Arctic Ocean
Retrieve all samples from this project

Submission
EBI; 2023-10-28
Accession:
SAMEA114237828
ID:
38026304

Supplemental Content

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...
Support Center