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Metagenome-Assembled Genome: ERR10149256_bin.8_MetaWRAP_v1.3_MAG

Identifiers
BioSample: SAMEA114096280; SRA: ERS16080121
Organism
Bifidobacterium longum
cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Attributes
broad-scale environmental contextHuman digestive system
collection date2020-04-03
environmental mediumfaeces
geographic locationSouth Korea
investigation typemetagenome-assembled genome
isolation sourcehuman feces metagenome
project namewhole metagenomic sequencing for child gut microbiome
sample nameERR10149256_bin.8_MetaWRAP_v1.3_MAG
ENA-CHECKLISTERC000047
ENA-FIRST-PUBLIC2023-07-18T16:27:40Z
ENA-LAST-UPDATE2023-07-18T16:27:40Z
External IdSAMEA114096280
INSDC center aliasEMG
INSDC center nameEMG
INSDC first public2023-07-18T16:27:40Z
INSDC last update2023-07-18T16:27:40Z
INSDC statuspublic
Submitter IdERR10149256_bin.8_MetaWRAP_v1.3_MAG
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwaremetaspades v3.15.3
binning parametersMaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.
binning softwareMetaWRAP v1.3
broker nameEMG broker account, EMBL-EBI
completeness score100
completeness softwareCheckM
contamination score0.0
geographic location (latitude)0.0
geographic location (longitude)0.0
local environmental contextcolon
metagenomic sourcehuman feces metagenome
sample derived fromSAMEA111279331
scientific_nameBifidobacterium longum
sequencing methodIllumina HiSeq 4000
taxonomic classificationThe taxonomy of this Metagenome-Assembled Genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Actinobacteria;c__Actinomycetia;o__Bifidobacteriales;f__Bifidobacteriaceae;g__Bifidobacterium;s__Bifidobacterium longum
taxonomic identity markermulti-marker approach
Description

This sample represents a Third Party Annotation (TPA) metagenome-assembled genome assembled from the metagenomic run ERR10149256 of study ERP140641.

BioProject
PRJEB63310
Retrieve all samples from this project

Submission
EBI; 2023-07-21
Accession:
SAMEA114096280
ID:
36671314

BioProject Nucleotide

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