Metagenome-Assembled Genome: SRR22541662_bin.12_Me... - BioSample

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Metagenome-Assembled Genome: SRR22541662_bin.12_MetaWRAP_v1.3_MAG

Identifiers: BioSample: SAMEA114065154; SRA: ERS16049017

Organism: Bifidobacterium pseudocatenulatum
cellular organisms; Bacteria; Terrabacteria group; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium

Attributes

broad-scale environmental context	Human digestive system
collection date	2018-04-26
environmental medium	faeces
geographic location	China
investigation type	metagenome-assembled genome
isolation source	human feces metagenome
project name	Investigating what the microbiota is and how them interact
sample name	SRR22541662_bin.12_MetaWRAP_v1.3_MAG
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2023-07-13T20:34:56Z
ENA-LAST-UPDATE	2023-07-13T20:34:56Z
External Id	SAMEA114065154
INSDC center alias	EMG
INSDC center name	EMG
INSDC first public	2023-07-13T20:34:56Z
INSDC last update	2023-07-13T20:34:56Z
INSDC status	public
Submitter Id	SRR22541662_bin.12_MetaWRAP_v1.3_MAG
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	metaspades v3.15.3
binning parameters	MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.
binning software	MetaWRAP v1.3
broker name	EMG broker account, EMBL-EBI
completeness score	100
completeness software	CheckM
contamination score	0.23
geographic location (latitude)	39.9
geographic location (longitude)	116.3
local environmental context	colon
metagenomic source	human feces metagenome
sample derived from	SAMN32064698
scientific_name	Bifidobacterium pseudocatenulatum
sequencing method	Illumina NovaSeq 6000
taxonomic classification	The taxonomy of this Metagenome-Assembled Genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Actinobacteria;c__Actinomycetia;o__Bifidobacteriales;f__Bifidobacteriaceae;g__Bifidobacterium;s__Bifidobacterium pseudocatenulatum
taxonomic identity marker	multi-marker approach

Description: This sample represents a Third Party Annotation (TPA) metagenome-assembled genome assembled from the metagenomic run SRR22541662 of study SRP411522.